Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K28_RS26935 Genome accession   NZ_CP027711
Coordinates   5990899..5992266 (-) Length   455 a.a.
NCBI ID   WP_025807574.1    Uniprot ID   A0AAX3FUY9
Organism   Pseudomonas chlororaphis subsp. piscium strain ChPhzTR44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5985899..5997266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K28_RS26910 (C4K28_5426) - 5986737..5986934 (-) 198 WP_007930039.1 YbdD/YjiX family protein -
  C4K28_RS26915 (C4K28_5427) - 5986950..5989016 (-) 2067 WP_063433092.1 carbon starvation CstA family protein -
  C4K28_RS26920 (C4K28_5428) - 5989227..5989688 (+) 462 WP_063433093.1 isoprenylcysteine carboxylmethyltransferase family protein -
  C4K28_RS26925 (C4K28_5429) - 5989747..5990115 (+) 369 WP_063433094.1 PilZ domain-containing protein -
  C4K28_RS26930 (C4K28_5430) - 5990141..5990869 (-) 729 WP_063433095.1 hypothetical protein -
  C4K28_RS26935 (C4K28_5431) radA 5990899..5992266 (-) 1368 WP_025807574.1 DNA repair protein RadA Machinery gene
  C4K28_RS26940 (C4K28_5432) - 5992312..5992860 (-) 549 WP_063433096.1 ankyrin repeat domain-containing protein -
  C4K28_RS26945 (C4K28_5433) katB 5993050..5994591 (-) 1542 WP_025807577.1 catalase KatB -
  C4K28_RS26950 (C4K28_5434) mscL 5994878..5995282 (+) 405 WP_016703708.1 large-conductance mechanosensitive channel protein MscL -
  C4K28_RS26955 (C4K28_5435) - 5995340..5996116 (-) 777 WP_106698691.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48799.30 Da        Isoelectric Point: 7.1317

>NTDB_id=279081 C4K28_RS26935 WP_025807574.1 5990899..5992266(-) (radA) [Pseudomonas chlororaphis subsp. piscium strain ChPhzTR44]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMAALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPQGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279081 C4K28_RS26935 WP_025807574.1 5990899..5992266(-) (radA) [Pseudomonas chlororaphis subsp. piscium strain ChPhzTR44]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGCCAGTGCGGCGAATG
CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGTGGCGCCGCAGCCCCTAGCGGTCGTACCGGCTGGGCCG
GCCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAGGAGATACCGCGCTTTTCCACGGCTTCCGGCGAACTG
GACCGGGTGCTCGGTGGCGGCCTGGTCGACGGTTCGGTGGTGCTGATCGGCGGCGACCCGGGGATCGGCAAGTCGACCAT
TCTGCTGCAGACCCTGTGCAACATCGCCACCCGCATGGCGGCGCTCTACGTCACCGGCGAAGAATCGCAGCAACAGGTGG
CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCCCGGCTGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATTTTCACCGAGCAACTGCAATCGGCCCC
CGGCGGTGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGTTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGATGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACCGCGGCCTGAAAGAGGTTTCCAACCCTTCGGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTTCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AATCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCATCGCCATGGCGGCAT
CCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCACGACTTGCTGGTGTTTGGCGAAGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAAGCGGCCAAACATGGTTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCACAGGGCCTGCGGATCATTGCGGTAACGCGTCTGGAGCAGGCGCTGGATGCGCTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459
  radA Streptococcus pneumoniae Rx1

45.833

100

0.459
  radA Streptococcus pneumoniae D39

45.833

100

0.459
  radA Streptococcus pneumoniae R6

45.833

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.833

100

0.459

Multiple sequence alignment