Detailed information NTG0279080

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K28_RS26690
• Genome accession: NZ_CP027711
• Coordinates: 5940179..5941507 (+)
• Length: 442 a.a.
• NCBI ID: WP_124303645.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain ChPhzTR44
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5935179..5946507

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K28_RS26670 (C4K28_5379)	pgeF	5936677..5937402 (-)	726	WP_124303641.1	peptidoglycan editing factor PgeF	-
C4K28_RS26675 (C4K28_5380)	rluD	5937399..5938361 (-)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K28_RS26680 (C4K28_5381)	-	5938514..5939536 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
C4K28_RS26685 (C4K28_5382)	-	5939671..5939904 (+)	234	WP_124303643.1	PP0621 family protein	-
C4K28_RS26690 (C4K28_5383)	pilR	5940179..5941507 (+)	1329	WP_124303645.1	sigma-54 dependent transcriptional regulator	Regulator
C4K28_RS26695 (C4K28_5384)	thiO	5941504..5942604 (-)	1101	WP_063433073.1	glycine oxidase ThiO	-
C4K28_RS26700 (C4K28_5385)	-	5942659..5943060 (-)	402	WP_009050937.1	type IV pilin protein	-
C4K28_RS26705 (C4K28_5386)	-	5943074..5946142 (-)	3069	WP_124373536.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48888.25 Da
• Isoelectric Point: 8.9622

>NTDB_id=279080 C4K28_RS26690 WP_124303645.1 5940179..5941507(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain ChPhzTR44]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLARESFDLCLSDLHLPDGTGLELLEHIQRRRLRMPLA
ILSACARQETAVQALKAGAIDFLSKPVALARLRELLNSALPGSTPAPPATGPLLGDSAAMHKLRGQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGPRANRAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDARILCATHKALQAEVRAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQPLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279080 C4K28_RS26690 WP_124303645.1 5940179..5941507(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain ChPhzTR44]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCTTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAAGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGACTGGAATTACTCGAGCATATCCAGCGCCGTCGGCTGCGAATGCCGCTGGCA
ATACTCAGTGCCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAACTGCTGAACAGCGCCCTGCCCGGATCGACACCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGGCCACGGGCCAACCGCGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCACACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGCGGGCAGCAGGAAGTCCAGGTCGATGC
GCGCATTCTCTGCGCCACCCACAAGGCATTGCAGGCGGAAGTGCGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGACATCGAACCCTTGGCCACAGCCATCCTCGAG
CGGCTGGCGCAGGGCGACGGCCAACCGCTGGCACGGCTTCAGCCAAGCGCACTGTTGGCGCTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCCCAGGTGATCGACCTTGAAGACCATCTGCAA
GAAATCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.778	100	0.69
pilR	Acinetobacter baumannii strain A118	44.444	100	0.462