Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D9C10_RS17645 Genome accession   NZ_CP032853
Coordinates   3245183..3246316 (-) Length   377 a.a.
NCBI ID   WP_088272543.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MH-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3240183..3251316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C10_RS17605 (D9C10_17605) ywnA 3240311..3240712 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  D9C10_RS17610 (D9C10_17610) ureC 3240847..3242556 (-) 1710 WP_003243090.1 urease subunit alpha -
  D9C10_RS17615 (D9C10_17615) ureB 3242553..3242927 (-) 375 WP_003227726.1 urease subunit beta -
  D9C10_RS17620 (D9C10_17620) ureA 3242924..3243241 (-) 318 WP_014478236.1 urease subunit gamma -
  D9C10_RS17625 (D9C10_17625) - 3243435..3243557 (-) 123 WP_250615389.1 hypothetical protein -
  D9C10_RS17630 (D9C10_17630) - 3243804..3243986 (-) 183 WP_069837820.1 transporter substrate-binding protein -
  D9C10_RS17635 (D9C10_17635) csbD 3244287..3244475 (-) 189 WP_014481173.1 stress response protein CsbD -
  D9C10_RS17640 (D9C10_17640) - 3244548..3245027 (-) 480 WP_026113664.1 hypothetical protein -
  D9C10_RS17645 (D9C10_17645) rapC 3245183..3246316 (-) 1134 WP_088272543.1 response regulator aspartate phosphatase RapB Regulator
  D9C10_RS17655 (D9C10_17655) moaA 3246508..3247533 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  D9C10_RS17660 (D9C10_17660) fdhD 3247549..3248337 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  D9C10_RS17665 (D9C10_17665) - 3248439..3248600 (-) 162 WP_003227706.1 hypothetical protein -
  D9C10_RS17670 (D9C10_17670) ywmD 3248695..3249369 (-) 675 WP_041334709.1 VWA domain-containing protein -
  D9C10_RS17675 (D9C10_17675) - 3249422..3249562 (-) 141 WP_014481180.1 hypothetical protein -
  D9C10_RS17680 (D9C10_17680) ywmC 3249693..3250376 (-) 684 WP_041334706.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45060.18 Da        Isoelectric Point: 4.7546

>NTDB_id=279080 D9C10_RS17645 WP_088272543.1 3245183..3246316(-) (rapC) [Bacillus subtilis subsp. subtilis strain MH-1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALTVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=279080 D9C10_RS17645 WP_088272543.1 3245183..3246316(-) (rapC) [Bacillus subtilis subsp. subtilis strain MH-1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTACTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment