Detailed information NTG0279069

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K28_RS09100
• Genome accession: NZ_CP027711
• Coordinates: 1982771..1985002 (+)
• Length: 743 a.a.
• NCBI ID: WP_106696835.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain ChPhzTR44
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1977771..1990002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K28_RS09075 (C4K28_1815)	-	1978893..1979552 (+)	660	WP_124302553.1	transglutaminase family protein	-
C4K28_RS09080 (C4K28_1816)	-	1979595..1980218 (+)	624	WP_124302554.1	glutathione S-transferase	-
C4K28_RS09085 (C4K28_1817)	-	1980351..1981283 (+)	933	WP_124373012.1	ABC transporter ATP-binding protein	-
C4K28_RS09090 (C4K28_1818)	-	1981280..1982059 (+)	780	WP_124302555.1	ABC transporter permease	-
C4K28_RS09095 (C4K28_1819)	-	1982108..1982623 (-)	516	WP_124302556.1	DUF2062 domain-containing protein	-
C4K28_RS09100 (C4K28_1820)	comA	1982771..1985002 (+)	2232	WP_106696835.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K28_RS09105 (C4K28_1821)	exbB	1985105..1985740 (+)	636	WP_025804353.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K28_RS09110 (C4K28_1822)	-	1985737..1986165 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K28_RS09115 (C4K28_1823)	lpxK	1986165..1987175 (+)	1011	WP_025804352.1	tetraacyldisaccharide 4'-kinase	-
C4K28_RS09120 (C4K28_1824)	-	1987199..1987384 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K28_RS09125 (C4K28_1825)	kdsB	1987381..1988145 (+)	765	WP_124302557.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K28_RS09130 (C4K28_1826)	-	1988145..1988609 (+)	465	WP_124302558.1	low molecular weight protein-tyrosine-phosphatase	-
C4K28_RS09135 (C4K28_1827)	murB	1988606..1989625 (+)	1020	WP_124373013.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81421.57 Da
• Isoelectric Point: 10.0461

>NTDB_id=279069 C4K28_RS09100 WP_106696835.1 1982771..1985002(+) (comA) [Pseudomonas chlororaphis subsp. piscium strain ChPhzTR44]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWVLDDRLAEPLDGQTRWLEG
RVVGLPQQAEGVVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAAMQESWRARIRQRLLQVDSHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGDRVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSLALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYAEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279069 C4K28_RS09100 WP_106696835.1 1982771..1985002(+) (comA) [Pseudomonas chlororaphis subsp. piscium strain ChPhzTR44]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGTGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCCGAGGGCGTGGTGCGTTTCGAGCTGGAAGGCGGACGGGCGCGGCGCGGACGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCACCGGTGCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAACTCA
AGCGGCCCGTCGGCCTGGTCAATCTGCAAGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGG
ACGGTCAAGGATGGGCAGCTTCTGGCCGCCATGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TTCCCATGGGCGCGCTGGTGGCCTGGCGGCCCTGGTACTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGTCTGTGGCCCGGACGTTGGCCCTGGCTACCCTGGGCCTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTAGTGCTGATCT
GGCGTCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATCCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGTTGGCGGAACCCTGGATCAGCCTGCTGGTGTTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTACTGTT
CCGCGGTCTGGCGCTGCTGGCTGCCCAATGGCCGGCGTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGTTGTTGCTGCCCGCCGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGTTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGTTGCCGTATGGCGAGGCGGAGGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGACTCCGACCTGGGCGACCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCATTGCCCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCACGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGATTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGAGTACGTTTTTCCCTGTGGCAATGGGCAGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCAGGCGGAA
CGCGCGCTGTTGAATACTCCGCTGGCCGTCGAAACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCTGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGGGGACACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGCACATACGCCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624