Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | ECDH10B_RS25580 | Genome accession | NC_010473 |
| Coordinates | 2165340..2165786 (+) | Length | 148 a.a. |
| NCBI ID | WP_000187523.1 | Uniprot ID | P76362 |
| Organism | Escherichia coli str. K-12 substr. DH10B | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2160340..2170786
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECDH10B_RS10950 (ECDH10B_2146) | agn43 | 2160571..2163690 (+) | 3120 | WP_000820410.1 | autotransporter adhesin Ag43 | - |
| ECDH10B_RS10955 (ECDH10B_2147) | yeeR | 2163811..2165343 (+) | 1533 | WP_001350525.1 | protein YeeR | - |
| ECDH10B_RS25580 (ECDH10B_2148) | radC | 2165340..2165786 (+) | 447 | WP_000187523.1 | RadC family protein | Machinery gene |
| ECDH10B_RS10965 (ECDH10B_2149) | yeeT | 2165849..2166070 (+) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| ECDH10B_RS10970 (ECDH10B_2150) | cbeA | 2166144..2166512 (+) | 369 | WP_001285584.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| ECDH10B_RS10975 (ECDH10B_2151) | cbtA | 2166601..2166975 (+) | 375 | WP_000854814.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | - |
| ECDH10B_RS10980 (ECDH10B_2152) | yeeW | 2166972..2167166 (+) | 195 | WP_000988600.1 | DUF5983 family protein | - |
| ECDH10B_RS26210 | - | 2167212..2167292 (+) | 81 | Protein_2130 | hypothetical protein | - |
| ECDH10B_RS24360 | - | 2167581..2167709 (-) | 129 | Protein_2131 | transposase domain-containing protein | - |
| ECDH10B_RS10990 | - | 2167781..2167963 (+) | 183 | WP_001016348.1 | EutP/PduV family microcompartment system protein | - |
| ECDH10B_RS10995 (ECDH10B_2154) | tmaR | 2168064..2168393 (-) | 330 | WP_000450409.1 | DUF496 family protein | - |
| ECDH10B_RS11000 (ECDH10B_2155) | yeeA | 2168565..2169623 (-) | 1059 | WP_001200891.1 | FUSC family protein | - |
| ECDH10B_RS11005 (ECDH10B_2156) | sbmC | 2169821..2170294 (-) | 474 | WP_001105415.1 | DNA gyrase inhibitor SbmC | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16556.98 Da Isoelectric Point: 7.6151
>NTDB_id=27905 ECDH10B_RS25580 WP_000187523.1 2165340..2165786(+) (radC) [Escherichia coli str. K-12 substr. DH10B]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 447 bp
>NTDB_id=27905 ECDH10B_RS25580 WP_000187523.1 2165340..2165786(+) (radC) [Escherichia coli str. K-12 substr. DH10B]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
76.351 |
0.419 |