Detailed information NTG0279044

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: D9C10_RS11390
• Genome accession: NZ_CP032853
• Coordinates: 2058194..2059321 (-)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain MH-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2053194..2064321

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C10_RS23160	-	2053241..2053453 (-)	213	Protein_2215	recombinase family protein	-
D9C10_RS11370 (D9C10_11370)	fumC	2053672..2055060 (-)	1389	WP_121548946.1	class II fumarate hydratase	-
D9C10_RS11375 (D9C10_11375)	-	2055227..2056117 (+)	891	WP_014480326.1	LysR family transcriptional regulator	-
D9C10_RS11380 (D9C10_11380)	-	2057059..2057454 (+)	396	WP_046160622.1	VOC family protein	-
D9C10_RS11390 (D9C10_11390)	rapC	2058194..2059321 (-)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
D9C10_RS23395 (D9C10_11395)	-	2059503..2061429 (+)	1927	Protein_2220	T7SS effector LXG polymorphic toxin	-
D9C10_RS11400 (D9C10_11400)	-	2061443..2061730 (+)	288	WP_014480331.1	hypothetical protein	-
D9C10_RS11410 (D9C10_11410)	-	2062133..2062573 (+)	441	WP_014480332.1	SMI1/KNR4 family protein	-
D9C10_RS11415 (D9C10_11415)	-	2062672..2063124 (+)	453	WP_014480333.1	SMI1/KNR4 family protein	-
D9C10_RS11420 (D9C10_11420)	cdiI	2063221..2063580 (+)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
D9C10_RS11425 (D9C10_11425)	-	2063685..2064164 (+)	480	WP_224588637.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=279044 D9C10_RS11390 WP_014480328.1 2058194..2059321(-) (rapC) [Bacillus subtilis subsp. subtilis strain MH-1]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=279044 D9C10_RS11390 WP_014480328.1 2058194..2059321(-) (rapC) [Bacillus subtilis subsp. subtilis strain MH-1]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397