Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   D9C10_RS08825 Genome accession   NZ_CP032853
Coordinates   1617684..1619459 (-) Length   591 a.a.
NCBI ID   WP_121548885.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1612684..1624459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C10_RS08805 (D9C10_08805) desE 1613079..1614137 (+) 1059 WP_121548879.1 fatty acid desaturase DesE -
  D9C10_RS08810 (D9C10_08810) desK 1614257..1615369 (+) 1113 WP_121548881.1 two-component sensor histidine kinase DesK -
  D9C10_RS08815 (D9C10_08815) desR 1615388..1615987 (+) 600 WP_121548883.1 two-component system response regulator DesR -
  D9C10_RS08820 (D9C10_08820) walN 1616585..1617448 (-) 864 WP_041339842.1 3D domain-containing protein -
  D9C10_RS08825 (D9C10_08825) recQ 1617684..1619459 (-) 1776 WP_121548885.1 DNA helicase RecQ Machinery gene
  D9C10_RS08840 (D9C10_08840) azoJ 1620025..1620651 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  D9C10_RS08845 (D9C10_08845) stpP 1620804..1621295 (-) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  D9C10_RS08850 (D9C10_08850) - 1621370..1621702 (-) 333 WP_014480020.1 hypothetical protein -
  D9C10_RS08855 (D9C10_08855) - 1621780..1622007 (+) 228 WP_014480021.1 hypothetical protein -
  D9C10_RS08860 (D9C10_08860) yocM 1621994..1622470 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  D9C10_RS08865 (D9C10_08865) - 1622537..1622800 (+) 264 WP_004399338.1 hypothetical protein -
  D9C10_RS08870 (D9C10_08870) - 1622805..1623038 (+) 234 WP_003231251.1 hypothetical protein -
  D9C10_RS08875 (D9C10_08875) yozO 1623132..1623476 (-) 345 WP_003220141.1 PH domain-containing protein -
  D9C10_RS08880 (D9C10_08880) yozC 1623832..1624035 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67382.79 Da        Isoelectric Point: 6.1778

>NTDB_id=279023 D9C10_RS08825 WP_121548885.1 1617684..1619459(-) (recQ) [Bacillus subtilis subsp. subtilis strain MH-1]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQIVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLASSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=279023 D9C10_RS08825 WP_121548885.1 1617684..1619459(-) (recQ) [Bacillus subtilis subsp. subtilis strain MH-1]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCAG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATTTATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATTAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATTGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCCTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCAGCTCCAAAAATAAAAAAGTTCTTGAAAATGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGAAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTATTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

HRDC domain (HRDC)

(518-583)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

DEAD/DEAH box helicase (DEAD)

(21-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.323

100

0.993