Detailed information NTG0278989

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K37_RS09220
• Genome accession: NZ_CP027708
• Coordinates: 1998721..2000952 (+)
• Length: 743 a.a.
• NCBI ID: WP_124323848.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain ATCC 17411
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1993721..2005952

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K37_RS09195 (C4K37_1866)	-	1994843..1995502 (+)	660	WP_124323847.1	transglutaminase family protein	-
C4K37_RS09200 (C4K37_1867)	-	1995545..1996168 (+)	624	WP_106696834.1	glutathione S-transferase	-
C4K37_RS09205 (C4K37_1868)	-	1996301..1997233 (+)	933	WP_025804356.1	ABC transporter ATP-binding protein	-
C4K37_RS09210 (C4K37_1869)	-	1997230..1998009 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K37_RS09215 (C4K37_1870)	-	1998058..1998573 (-)	516	WP_025804355.1	DUF2062 domain-containing protein	-
C4K37_RS09220 (C4K37_1871)	comA	1998721..2000952 (+)	2232	WP_124323848.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K37_RS09225 (C4K37_1872)	exbB	2001055..2001690 (+)	636	WP_025804353.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K37_RS09230 (C4K37_1873)	-	2001687..2002115 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K37_RS09235 (C4K37_1874)	lpxK	2002115..2003125 (+)	1011	WP_102676843.1	tetraacyldisaccharide 4'-kinase	-
C4K37_RS09240 (C4K37_1875)	-	2003149..2003334 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K37_RS09245 (C4K37_1876)	kdsB	2003331..2004095 (+)	765	WP_124302557.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K37_RS09250 (C4K37_1877)	-	2004095..2004559 (+)	465	WP_124323849.1	low molecular weight protein-tyrosine-phosphatase	-
C4K37_RS09255 (C4K37_1878)	murB	2004556..2005575 (+)	1020	WP_025804350.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81292.40 Da
• Isoelectric Point: 10.1404

>NTDB_id=278989 C4K37_RS09220 WP_124323848.1 1998721..2000952(+) (comA) [Pseudomonas chlororaphis subsp. piscium strain ATCC 17411]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYAEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=278989 C4K37_RS09220 WP_124323848.1 1998721..2000952(+) (comA) [Pseudomonas chlororaphis subsp. piscium strain ATCC 17411]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCCGAGGGCCTGGTGCGTTTCGAACTGGAAGGCGGGCGGGCGCGGCGCGGGCGGAT
CCCCCAACGCTTGCGCCTGGCCTGGTATGGCGGGCCACCGGTCCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAACTCA
AGCGGCCCGTCGGCCTGGTCAATCTGCAAGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAGCTGCTGGCCGCGACGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCAGGGGCGCGCTGGTGGCCTGGCGGCCCTGGTACTGGGTGACGGCTCGGGGCTAAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACTGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTACCCTGGGCTTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGTCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATCCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGTTGGCGGAACCCTGGATCAGCCTGCTGGTGTTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTACTGTT
CCGCGGTCTGGCGCTGCTGGCTGCCCAATGGCCGGCCTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGTTGTTGCTGCCCGCCGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGTTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGTTGCCGTATGGCGAGGCGGAGGTCTGGCAACTGGATGTCGGGCAGGGCTTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGCGACTCCGACCTGGGCGCCCGGGTGGTGCTGC
CATCGTTGCGCAAGCTGGGCATTGCCCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCACGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGTTGGTCAGCGGCGATCCCGAGGGATTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGAGTACGTTTTTCCCTGTGGCAATGGGCAGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCAGGCGGAA
CGCGCGCTGTTGAATACTCCGCTGGCCGTCGAAACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGGGGACACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAAGGAGCACTGCGGTTGATGCTG
GGCACATACGCCGAACCTACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624