Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K38_RS27825 Genome accession   NZ_CP027707
Coordinates   6134804..6136171 (-) Length   455 a.a.
NCBI ID   WP_053281008.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. piscium strain DSM 21509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6129804..6141171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K38_RS27800 (C4K38_5626) - 6130644..6130841 (-) 198 WP_007930039.1 YbdD/YjiX family protein -
  C4K38_RS27805 (C4K38_5627) - 6130857..6132923 (-) 2067 WP_038575596.1 carbon starvation CstA family protein -
  C4K38_RS27810 (C4K38_5628) - 6133133..6133594 (+) 462 WP_053281006.1 isoprenylcysteine carboxylmethyltransferase family protein -
  C4K38_RS27815 (C4K38_5629) - 6133653..6134021 (+) 369 WP_053281007.1 PilZ domain-containing protein -
  C4K38_RS27820 (C4K38_5630) - 6134047..6134775 (-) 729 WP_053281014.1 hypothetical protein -
  C4K38_RS27825 (C4K38_5631) radA 6134804..6136171 (-) 1368 WP_053281008.1 DNA repair protein RadA Machinery gene
  C4K38_RS27830 (C4K38_5632) - 6136217..6136765 (-) 549 WP_053281009.1 ankyrin repeat domain-containing protein -
  C4K38_RS27835 (C4K38_5633) katB 6136947..6138488 (-) 1542 WP_053281010.1 catalase KatB -
  C4K38_RS27840 (C4K38_5634) mscL 6138775..6139179 (+) 405 WP_053281011.1 large-conductance mechanosensitive channel protein MscL -
  C4K38_RS27845 (C4K38_5635) - 6139238..6140014 (-) 777 WP_053281012.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48825.34 Da        Isoelectric Point: 7.1317

>NTDB_id=278975 C4K38_RS27825 WP_053281008.1 6134804..6136171(-) (radA) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPQGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=278975 C4K38_RS27825 WP_053281008.1 6134804..6136171(-) (radA) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGCCAGTGCGGTGAATG
CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGCGCCGCGGCCCCCAGCGGTCGCACCGGCTGGGCCG
GCCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAGGAGATCCCGCGCTTTTCCACGGCTTCCGGCGAACTG
GACCGGGTGCTCGGCGGCGGCCTGGTCGACGGTTCGGTGGTGCTGATCGGCGGCGACCCGGGGATCGGTAAGTCGACCAT
TCTGTTGCAGACCCTGTGCAACATCGCTACCCGCATGCCGGCGCTCTACGTCACCGGCGAAGAATCGCAGCAACAGGTGG
CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCCCGGCTGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAATCGGCCCC
CGGCGGTGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCAATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAACACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAATCCGATGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGTGCAGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACCGCGGCCTGAAAGAAGTTTCCAACCCTTCGGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACTTGGCC
AACCCGCGGCGGGTGACCTTGGGTCTGGACCAGAATCGCCTGGCGATGCTGCTGGCGGTGCTGCATCGCCATGGCGGCAT
CCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCACGACTTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAAGCGGCCAAGCATGGTTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCACAGGGCCTGCGGATCATTGCGGTAACGCGTCTGGAGCAGGCGCTGGATGCGCTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459
  radA Streptococcus pneumoniae Rx1

45.833

100

0.459
  radA Streptococcus pneumoniae D39

45.833

100

0.459
  radA Streptococcus pneumoniae R6

45.833

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.833

100

0.459

Multiple sequence alignment