Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D9C10_RS00510 Genome accession   NZ_CP032853
Coordinates   78441..79082 (+) Length   213 a.a.
NCBI ID   WP_014478974.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MH-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 73441..84082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C10_RS00480 (D9C10_00480) ydfE 74635..75258 (-) 624 WP_014478968.1 flavin reductase family protein -
  D9C10_RS00485 (D9C10_00485) ydfF 75348..76028 (+) 681 WP_015715305.1 winged helix-turn-helix domain-containing protein -
  D9C10_RS00490 (D9C10_00490) ydfG 76109..76552 (-) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  D9C10_RS00495 (D9C10_00495) - 76638..76817 (-) 180 WP_010886421.1 hypothetical protein -
  D9C10_RS00500 (D9C10_00500) - 76814..76957 (-) 144 WP_014478971.1 hypothetical protein -
  D9C10_RS00505 (D9C10_00505) ydfH 77225..78448 (+) 1224 WP_033881070.1 two-component system sensor histidine kinase YdfH -
  D9C10_RS00510 (D9C10_00510) vraR 78441..79082 (+) 642 WP_014478974.1 two-component system response regulator YdfI Regulator
  D9C10_RS00515 (D9C10_00515) pleJ 79198..81372 (+) 2175 WP_069837277.1 MMPL family transporter -
  D9C10_RS00520 (D9C10_00520) - 81502..82854 (+) 1353 WP_014478984.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24004.93 Da        Isoelectric Point: 5.1938

>NTDB_id=278968 D9C10_RS00510 WP_014478974.1 78441..79082(+) (vraR) [Bacillus subtilis subsp. subtilis strain MH-1]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRSETQLTEKEVIVLKAI
AKGLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=278968 D9C10_RS00510 WP_014478974.1 78441..79082(+) (vraR) [Bacillus subtilis subsp. subtilis strain MH-1]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACGGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGACGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

99.531

0.371