Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K39_RS21195 Genome accession   NZ_CP027706
Coordinates   4570653..4572020 (+) Length   455 a.a.
NCBI ID   WP_068576397.1    Uniprot ID   -
Organism   Pseudomonas sessilinigenes strain CMR12a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4565653..4577020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K39_RS21175 (C4K39_4285) - 4566916..4567692 (+) 777 WP_124347334.1 ferredoxin--NADP reductase -
  C4K39_RS21180 (C4K39_4286) mscL 4567744..4568157 (-) 414 WP_068576390.1 large-conductance mechanosensitive channel protein MscL -
  C4K39_RS21185 (C4K39_4287) katB 4568443..4569984 (+) 1542 WP_068576392.1 catalase KatB -
  C4K39_RS21190 (C4K39_4288) - 4570059..4570607 (+) 549 WP_124347335.1 ankyrin repeat domain-containing protein -
  C4K39_RS21195 (C4K39_4289) radA 4570653..4572020 (+) 1368 WP_068576397.1 DNA repair protein RadA Machinery gene
  C4K39_RS21200 (C4K39_4290) - 4572058..4572780 (+) 723 WP_176719731.1 hypothetical protein -
  C4K39_RS21205 (C4K39_4291) - 4572795..4573163 (-) 369 WP_068576400.1 PilZ domain-containing protein -
  C4K39_RS21210 (C4K39_4292) - 4573441..4575507 (+) 2067 WP_068576401.1 carbon starvation CstA family protein -
  C4K39_RS21215 (C4K39_4293) - 4575523..4575720 (+) 198 WP_007937254.1 YbdD/YjiX family protein -
  C4K39_RS21220 (C4K39_4294) yjiA 4575798..4576769 (+) 972 WP_124347336.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48786.36 Da        Isoelectric Point: 7.1317

>NTDB_id=278950 C4K39_RS21195 WP_068576397.1 4570653..4572020(+) (radA) [Pseudomonas sessilinigenes strain CMR12a]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMIESGGAAAPAGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAMRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLSMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLKIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=278950 C4K39_RS21195 WP_068576397.1 4570653..4572020(+) (radA) [Pseudomonas sessilinigenes strain CMR12a]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGTTCCACCTTTCCCAAATGGGCCGGGCAATGCGGTGAATG
CGGTGCCTGGAACACCCTGACCGAGACCATGATCGAAAGCGGCGGTGCCGCGGCTCCCGCTGGGCGTACGGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAGGAAATCCCGCGTTTCTCCACTGCATCCGGCGAACTC
GACCGGGTGCTCGGCGGCGGCCTGGTGGATGGCTCGGTGGTGCTGATCGGCGGTGATCCGGGGATCGGCAAGTCGACCAT
CCTCCTGCAGACCTTGTGCAACATCGCTATGCGCATGCCGGCGCTGTATGTCACTGGCGAGGAATCCCAGCAGCAGGTGG
CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTGCGGGTGATGACCGAAACCTGCATCGAGACCATCATTGCC
ACGGCCCGGGTAGAGAAGCCCAAGGTGATGGTGATCGACTCCATCCAGACCATCTTCACCGAACAGCTGCAATCGGCCCC
GGGCGGTGTATCCCAGGTACGCGAGAGTGCTGCCTTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCCCTGGCCGGTCCGCGGGTGCTGGAGCACATGGTGGATACGGTGCTGTATTTCGAA
GGCGAGTCCGATGGGCGCCTGCGCCTGTTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTTGGCGTGTTCGG
CATGACCGATCGTGGCTTGAAGGAGGTCTCCAACCCATCGGCGATCTTCCTCACCCGGGCCCAGGAGGAGGTGCCGGGCA
GCGTGGTCATGGCCACTTGGGAAGGCACCCGGCCTATGCTGGTGGAGGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AACCCGCGCCGGGTGACCCTGGGCCTGGACCAGAACCGCTTGTCCATGCTGCTGGCAGTATTGCACCGCCACGGCGGTAT
CCCGACCCACGACCAGGATGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTCCTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCGAGCCTGCGCAACCGGCCGTTGCCCCATGACCTGCTGGTGTTCGGCGAGGTGGGCCTGTCCGGC
GAGGTGCGTCCGGTGCCCAGTGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCACGGCTTCAAGCGGGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAGCCGCCGGCAGGGCTGAAGATCATCGCCGTGACCCGCCTGGAGCAGGCATTGGATGCACTTT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.087

100

0.466
  radA Streptococcus pneumoniae R6

46.087

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.466
  radA Streptococcus pneumoniae D39

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464
  radA Streptococcus mitis NCTC 12261

46.053

100

0.462

Multiple sequence alignment