Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K40_RS27230 Genome accession   NZ_CP027705
Coordinates   5896322..5897689 (-) Length   455 a.a.
NCBI ID   WP_022641120.1    Uniprot ID   -
Organism   Pseudomonas sp. CMR5c     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5891322..5902689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K40_RS27205 (C4K40_5519) yjiA 5891558..5892544 (-) 987 WP_162165131.1 GTPase -
  C4K40_RS27210 (C4K40_5520) - 5892646..5892843 (-) 198 WP_007937254.1 YbdD/YjiX family protein -
  C4K40_RS27215 (C4K40_5521) - 5892860..5894926 (-) 2067 WP_053134681.1 carbon starvation CstA family protein -
  C4K40_RS27220 (C4K40_5522) - 5895179..5895547 (+) 369 WP_022641118.1 PilZ domain-containing protein -
  C4K40_RS27225 (C4K40_5523) - 5895562..5896290 (-) 729 WP_053134684.1 hypothetical protein -
  C4K40_RS27230 (C4K40_5524) radA 5896322..5897689 (-) 1368 WP_022641120.1 DNA repair protein RadA Machinery gene
  C4K40_RS27235 (C4K40_5525) - 5897735..5898283 (-) 549 WP_022641121.1 ankyrin repeat domain-containing protein -
  C4K40_RS27240 (C4K40_5526) katB 5898465..5900006 (-) 1542 WP_053134687.1 catalase KatB -
  C4K40_RS27245 (C4K40_5527) mscL 5900295..5900708 (+) 414 WP_022641123.1 large-conductance mechanosensitive channel protein MscL -
  C4K40_RS27250 (C4K40_5528) - 5900763..5901539 (-) 777 WP_053134690.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48754.30 Da        Isoelectric Point: 7.1317

>NTDB_id=278925 C4K40_RS27230 WP_022641120.1 5896322..5897689(-) (radA) [Pseudomonas sp. CMR5c]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLVETMIESGGAAAPAGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLSMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLKIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=278925 C4K40_RS27230 WP_022641120.1 5896322..5897689(-) (radA) [Pseudomonas sp. CMR5c]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCCACCTTTCCCAAATGGGCCGGGCAATGCGGTGAATG
CGGCGCCTGGAACACCCTGGTCGAGACCATGATCGAAAGCGGCGGTGCCGCGGCGCCCGCCGGGCGTACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAGGAGATCCCGCGTTTCTCCACCGCTTCCGGCGAGCTC
GACCGGGTGCTCGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGTGATCCGGGGATCGGCAAGTCGACCAT
CCTGCTGCAGACCTTGTGCAACATCGCCACGCGTATGCCGGCGTTGTACGTCACCGGCGAGGAGTCCCAGCAACAGGTAG
CGATGCGCGCCCGTCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTAATGACCGAGACCTGTATCGAGACCATCATCGCC
ACGGCCCGGGTAGAGAAGCCCAAGGTCATGGTGATCGACTCCATCCAGACCATCTTCACCGAACAACTGCAATCGGCCCC
AGGCGGTGTGTCCCAGGTTCGCGAGAGCGCCGCCTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTACTGGAGCACATGGTGGACACCGTGCTGTATTTCGAG
GGGGAGTCCGATGGTCGCCTGCGCCTGCTACGGGCGGTGAAGAATCGCTTCGGCGCGGTCAACGAGCTTGGCGTGTTCGG
CATGACCGACCGTGGGCTGAAGGAGGTCTCCAACCCGTCGGCGATCTTCCTCACCCGGGCCCAGGAGGAAGTGCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AACCCGCGCCGGGTCACCCTGGGCCTGGATCAGAACCGCTTGTCCATGCTGCTGGCGGTCCTGCACCGCCACGGCGGCAT
CCCGACCCACGACCAGGATGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAGACCGCCTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCGAGCCTGCGCAACCGGCCGTTGCCCCATGACCTGCTGGTGTTCGGCGAGGTTGGCCTGTCCGGC
GAGGTGCGCCCGGTGCCCAGTGGCCAGGAACGCTTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGGGCCATCGTGCCCAA
GGGCAACGCGCCGAAGGAGCCGCCGGCAGGGCTGAAGATCATCGCCGTGACCCGCCTGGAGCAGGCACTGGATGCACTTT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464

Multiple sequence alignment