Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D9C09_RS10895 Genome accession   NZ_CP032852
Coordinates   2085293..2086429 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain GFR-12     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2080293..2091429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C09_RS10870 (D9C09_10870) - 2080480..2081832 (+) 1353 WP_014478984.1 IS1182 family transposase -
  D9C09_RS10875 (D9C09_10875) bstD 2081975..2082439 (-) 465 WP_014479541.1 DinB family protein -
  D9C09_RS10880 (D9C09_10880) yjoB 2082588..2083688 (+) 1101 Protein_2070 ATPase YjoB -
  D9C09_RS10890 (D9C09_10890) - 2084975..2085148 (+) 174 Protein_2072 ATPase -
  D9C09_RS10895 (D9C09_10895) rapC 2085293..2086429 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  D9C09_RS10900 (D9C09_10900) phrA 2086419..2086553 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  D9C09_RS10905 (D9C09_10905) yjpA 2086584..2086830 (-) 247 Protein_2075 YciI family protein -
  D9C09_RS10910 (D9C09_10910) xlyB 2086951..2087904 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  D9C09_RS10915 (D9C09_10915) yjqA 2087944..2088321 (-) 378 WP_014479546.1 PH domain-containing protein -
  D9C09_RS10920 (D9C09_10920) pghB 2088426..2089028 (+) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  D9C09_RS10925 (D9C09_10925) xpdC 2089105..2089941 (+) 837 WP_003245071.1 manganese catalase family protein -
  D9C09_RS10930 (D9C09_10930) xkdA 2089985..2090581 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  D9C09_RS10935 (D9C09_10935) xre 2090744..2091085 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=278890 D9C09_RS10895 WP_015252291.1 2085293..2086429(+) (rapC) [Bacillus subtilis subsp. subtilis strain GFR-12]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=278890 D9C09_RS10895 WP_015252291.1 2085293..2086429(+) (rapC) [Bacillus subtilis subsp. subtilis strain GFR-12]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418