Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C7D56_RS24565 Genome accession   NZ_CP027677
Coordinates   4786444..4787049 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4781444..4792049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7D56_RS24550 (C7D56_24515) helD 4781661..4783715 (-) 2055 WP_063809325.1 DNA helicase IV -
  C7D56_RS24555 (C7D56_24520) - 4783839..4784285 (+) 447 WP_023243628.1 YccF domain-containing protein -
  C7D56_RS24560 (C7D56_24525) yccS 4784304..4786457 (+) 2154 WP_000950881.1 YccS family putative transporter -
  C7D56_RS24565 (C7D56_24530) sxy/tfoX 4786444..4787049 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  C7D56_RS24570 (C7D56_24535) sulA 4787266..4787775 (+) 510 WP_063809326.1 SOS-induced cell division inhibitor SulA -
  C7D56_RS24575 (C7D56_24540) ompA 4788132..4789184 (+) 1053 WP_001670727.1 porin OmpA -
  C7D56_RS24580 (C7D56_24545) matP 4789256..4789708 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  C7D56_RS24585 (C7D56_24550) - 4789894..4791654 (+) 1761 WP_063809327.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=278887 C7D56_RS24565 WP_001202375.1 4786444..4787049(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=278887 C7D56_RS24565 WP_001202375.1 4786444..4787049(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAATATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGTGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATATTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTGTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment