Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C6571_RS05740 Genome accession   NZ_CP027669
Coordinates   1219462..1221021 (-) Length   519 a.a.
NCBI ID   WP_106445845.1    Uniprot ID   A0A2S0MY84
Organism   Simplicispira suum strain SC1-8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1214462..1226021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6571_RS05720 (C6571_05720) - 1214792..1215463 (+) 672 WP_106445841.1 nitroreductase -
  C6571_RS05725 (C6571_05725) - 1215580..1217646 (+) 2067 WP_106445842.1 acyltransferase family protein -
  C6571_RS05730 (C6571_05730) - 1217692..1218138 (-) 447 WP_106445843.1 PIN domain-containing protein -
  C6571_RS05735 (C6571_05735) - 1218140..1219465 (-) 1326 WP_106445844.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  C6571_RS05740 (C6571_05740) rpoN/rpoN1 1219462..1221021 (-) 1560 WP_106445845.1 RNA polymerase factor sigma-54 Machinery gene
  C6571_RS05745 (C6571_05745) lptB 1221073..1221861 (-) 789 WP_420542625.1 LPS export ABC transporter ATP-binding protein -
  C6571_RS05750 (C6571_05750) lptA 1221876..1222568 (-) 693 WP_106445846.1 lipopolysaccharide transport periplasmic protein LptA -
  C6571_RS05755 (C6571_05755) - 1222721..1223362 (-) 642 WP_106445847.1 thiol:disulfide interchange protein DsbA/DsbL -
  C6571_RS05760 (C6571_05760) - 1223417..1224046 (-) 630 WP_106445848.1 SPOR domain-containing protein -
  C6571_RS05765 (C6571_05765) argS 1224061..1225758 (-) 1698 WP_106445849.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 56819.93 Da        Isoelectric Point: 4.7841

>NTDB_id=278850 C6571_RS05740 WP_106445845.1 1219462..1221021(-) (rpoN/rpoN1) [Simplicispira suum strain SC1-8]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLEIAQEVEQMLDENPFLERENEEAPREEFGLAQADIPAESTDTSMEFATY
SGADNTSTASAESQNDSDSPADDLLDWSGDGTHEMAPDDAEWGGDAPARVSSDSGEGTGDALDRAHEHGSLTDFLHRQAL
ALRLGDIDRAALSFLIESLSDNGYLEDPIEALAAGLAQGDAEEAEELVHRFTVALRLLQSLEPTGVGARHLGECLSLQLR
ELQADGVHDAVLVATALCICQQPLDLLARRDLRRLAPLCGASEEATRAAMALIAQLEPRPGRRFSNVERNAIVPDVLVRR
VGTGSAQFVVQLNPDVMPRLRVHDIYAGALRGHRGSDGHQALQQRLQEARWFIKNIQQRFDTILRVSKAIVERQKNFFVH
GELAMRPLVLRDIADELGLHESTISRVTTAKYMATPQGTYELKFFFGSGLGTDTGGNASSTAVRALIKQFVAAENPAKPL
SDNQIADMLKEQGIECARRTVAKYREALKIPITTLRKTL

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=278850 C6571_RS05740 WP_106445845.1 1219462..1221021(-) (rpoN/rpoN1) [Simplicispira suum strain SC1-8]
ATGAAGCCGGGTCTGTCGCTGCGCGTCTCGCAGCACCTGGCCTTGACGCCGCAGCTGCAGCAATCCATCCGTTTGCTGCA
GCTCTCGACGCTGGAAATCGCCCAGGAAGTCGAGCAGATGCTGGACGAAAACCCGTTTCTGGAACGCGAAAACGAAGAGG
CGCCACGGGAAGAATTTGGCCTGGCGCAGGCCGATATCCCGGCAGAGAGCACAGACACAAGCATGGAGTTTGCTACGTAT
TCAGGAGCTGATAACACAAGCACAGCAAGCGCTGAGAGCCAAAATGACTCAGATTCCCCGGCCGACGACCTGCTGGATTG
GTCCGGTGACGGAACGCACGAGATGGCGCCGGACGACGCCGAGTGGGGCGGCGACGCCCCCGCGCGAGTGTCCAGCGATT
CCGGCGAAGGCACGGGCGATGCGCTCGACCGCGCCCATGAGCACGGCTCGCTCACCGACTTCCTGCACCGCCAGGCGCTG
GCGCTGCGGCTCGGGGACATCGACCGCGCGGCGCTCTCCTTCCTGATCGAGTCGCTCAGCGACAACGGCTACCTGGAAGA
TCCCATCGAGGCGTTGGCCGCAGGCTTGGCGCAGGGGGACGCCGAGGAAGCCGAAGAACTGGTGCACCGCTTTACCGTGG
CGCTGCGTTTGTTGCAGAGCCTGGAGCCCACGGGCGTGGGCGCGCGCCATCTGGGCGAATGCCTGAGCCTGCAGCTGCGC
GAACTGCAGGCGGACGGCGTGCACGATGCAGTTCTGGTGGCCACGGCGCTGTGCATCTGCCAGCAGCCACTCGACCTGTT
GGCACGGCGCGATCTGCGGCGTCTGGCGCCGCTTTGCGGTGCCAGCGAAGAAGCCACGCGCGCAGCCATGGCCTTGATTG
CGCAGCTCGAACCCCGGCCTGGGCGGCGCTTTTCCAATGTGGAGCGCAACGCCATCGTGCCCGACGTCCTGGTGCGCCGC
GTGGGCACGGGCTCGGCACAGTTCGTCGTTCAGCTCAACCCCGATGTGATGCCGCGCCTGCGCGTGCACGACATCTACGC
AGGCGCCCTGCGCGGCCACCGCGGCAGCGACGGCCACCAGGCACTGCAGCAGCGCCTGCAGGAAGCGCGCTGGTTCATCA
AGAACATTCAGCAGCGCTTTGACACCATCCTGCGCGTCTCCAAGGCGATTGTCGAGCGGCAGAAAAACTTCTTTGTGCAC
GGCGAACTCGCCATGCGCCCGCTGGTGCTGCGCGACATTGCCGACGAGCTGGGCCTGCACGAATCGACCATCTCCCGCGT
CACCACCGCCAAGTACATGGCGACACCCCAGGGTACCTACGAACTCAAGTTCTTCTTTGGCTCGGGCCTGGGGACGGACA
CTGGGGGCAATGCGTCGAGCACGGCGGTGCGGGCGCTCATCAAGCAGTTTGTCGCCGCCGAGAACCCGGCCAAGCCCTTG
TCGGACAACCAGATCGCCGACATGCTCAAAGAGCAAGGCATTGAATGCGCGCGCCGCACCGTGGCCAAGTACCGCGAAGC
GCTGAAGATACCCATCACCACGCTGCGCAAGACACTATGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(145-346)

Sigma-54, DNA binding domain (Sigma54_DBD)

(361-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0MY84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.381

100

0.53

Multiple sequence alignment