Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C6568_RS08015 Genome accession   NZ_CP027667
Coordinates   1669740..1671122 (-) Length   460 a.a.
NCBI ID   WP_106683644.1    Uniprot ID   A0A2R3QBS6
Organism   Melaminivora suipulveris strain SC2-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1664740..1676122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6568_RS07990 (C6568_07990) - 1665486..1665695 (-) 210 WP_106683639.1 zinc-finger domain-containing protein -
  C6568_RS07995 (C6568_07995) - 1665701..1666639 (-) 939 WP_106683640.1 branched-chain amino acid transaminase -
  C6568_RS08000 (C6568_08000) - 1666697..1667107 (-) 411 WP_106683641.1 glycerate kinase -
  C6568_RS08005 (C6568_08005) - 1667279..1668733 (+) 1455 WP_106683642.1 amidase -
  C6568_RS08010 (C6568_08010) - 1668730..1669716 (+) 987 WP_106683643.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  C6568_RS08015 (C6568_08015) radA 1669740..1671122 (-) 1383 WP_106683644.1 DNA repair protein RadA Machinery gene
  C6568_RS08020 (C6568_08020) - 1671229..1672218 (-) 990 WP_106683645.1 tripartite tricarboxylate transporter substrate binding protein -
  C6568_RS08025 (C6568_08025) - 1672264..1673877 (-) 1614 WP_106683646.1 class I adenylate-forming enzyme family protein -
  C6568_RS08030 (C6568_08030) - 1673989..1675821 (-) 1833 WP_106685414.1 acyclic terpene utilization AtuA family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48180.67 Da        Isoelectric Point: 7.3837

>NTDB_id=278830 C6568_RS08015 WP_106683644.1 1669740..1671122(-) (radA) [Melaminivora suipulveris strain SC2-9]
MAKEKTLYTCTECAATSPRWLGKCPGCGAWNTLIESVAEAPGAGKNRLSAPQYAGLTQAQAVTPLAAIEATEVARMASGI
EELDRVLGGGVVEGGVALIGGDPGIGKSTLLLQAMDALQRAGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQLE
KILATVQATQPAVCVIDSIQTMYSDQLTSAPGSVAQVRECAAHLTRLAKATGIAVILVGHVTKEGAIAGPRVLEHMVDTV
LYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLRGVSNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDS
GGPSPRRLSVGLERDRLAMLLAVLHRHAGIASSDQDVFVNAVGGVRISEPAADLAVLLAITSSLRARALPKGFIAFGEVG
LAGEVRPAPRGQERLREAAKLGFTVAVVPKANAPKKPIAGLTIHTVERVEEAMQVVRGLE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=278830 C6568_RS08015 WP_106683644.1 1669740..1671122(-) (radA) [Melaminivora suipulveris strain SC2-9]
ATGGCGAAGGAAAAAACCCTCTACACCTGCACCGAATGCGCAGCCACCAGCCCGCGCTGGCTGGGCAAATGCCCCGGTTG
CGGCGCCTGGAACACGCTGATCGAAAGCGTCGCCGAGGCCCCCGGCGCCGGCAAGAACCGCCTGAGCGCGCCGCAGTACG
CCGGCCTGACGCAGGCGCAGGCCGTGACGCCGCTGGCCGCCATCGAGGCCACCGAAGTCGCGCGCATGGCCAGCGGCATC
GAGGAGCTGGACCGCGTGCTGGGCGGCGGCGTGGTCGAGGGCGGTGTGGCGCTGATCGGTGGCGACCCGGGCATCGGCAA
GTCCACGCTGCTGCTCCAGGCCATGGATGCGCTGCAGCGCGCGGGCCTGCCGACCTTGTATGTGACCGGCGAGGAAAGCG
GCGCCCAGGTGGCGCTGCGCTCGCGCCGTCTGGGGCTGGAGGCCAGCCAGGTCAACGTGCTGGCCGAGATCCAGCTGGAG
AAGATCCTGGCCACGGTGCAAGCCACGCAGCCGGCGGTGTGCGTGATCGACTCGATCCAGACCATGTACTCGGACCAGCT
GACCAGCGCGCCCGGCAGCGTGGCCCAGGTGCGCGAGTGCGCGGCGCACCTGACGCGCCTGGCCAAGGCCACTGGCATCG
CCGTGATCCTGGTCGGCCACGTGACCAAGGAAGGCGCCATCGCCGGCCCGCGCGTGCTGGAGCACATGGTCGACACGGTG
CTGTACTTCGAGGGCGACACGCACAGCAGCTTTCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTCAACGAGAT
CGGCGTCTTCGCCATGACCGAGCGCGGCCTGCGCGGTGTGTCCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCGAGC
CGGTGCCGGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCGATGCTGGTGGAGATCCAGGCGCTGGTCGACAGC
GGCGGCCCCAGCCCGCGCCGCCTGTCCGTGGGCCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCGGTGCTGCATCGCCA
CGCCGGCATCGCCTCGTCGGACCAGGACGTGTTCGTCAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCGGCAGCCGACC
TGGCGGTGCTGCTGGCCATCACCTCGTCCTTGCGCGCGCGCGCCCTGCCCAAAGGCTTCATCGCCTTTGGCGAAGTCGGC
CTGGCCGGCGAGGTGCGGCCTGCGCCGCGTGGCCAGGAGCGCCTGCGCGAGGCCGCCAAGCTGGGCTTCACCGTGGCGGT
GGTGCCCAAGGCGAATGCGCCGAAGAAGCCCATCGCCGGCCTGACCATCCACACCGTGGAGCGTGTCGAGGAAGCGATGC
AGGTGGTGCGCGGGCTGGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3QBS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.268

100

0.485
  radA Streptococcus mitis NCTC 12261

46.389

99.348

0.461
  radA Streptococcus mitis SK321

46.272

99.13

0.459
  radA Streptococcus pneumoniae TIGR4

46.98

97.174

0.457
  radA Streptococcus pneumoniae D39

46.98

97.174

0.457
  radA Streptococcus pneumoniae Rx1

46.98

97.174

0.457
  radA Streptococcus pneumoniae R6

46.98

97.174

0.457

Multiple sequence alignment