Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C6568_RS07350 Genome accession   NZ_CP027667
Coordinates   1549669..1551219 (-) Length   516 a.a.
NCBI ID   WP_106683529.1    Uniprot ID   A0A2R3QBC6
Organism   Melaminivora suipulveris strain SC2-9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1544669..1556219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6568_RS07320 (C6568_07320) - 1544937..1545797 (+) 861 WP_106683524.1 hypothetical protein -
  C6568_RS07325 (C6568_07325) - 1545859..1547160 (-) 1302 WP_106683525.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  C6568_RS07335 (C6568_07335) - 1547454..1547927 (-) 474 WP_106683526.1 putative toxin-antitoxin system toxin component, PIN family -
  C6568_RS07340 (C6568_07340) - 1547914..1549197 (-) 1284 WP_106683527.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  C6568_RS07345 (C6568_07345) - 1549194..1549646 (-) 453 WP_106683528.1 acyl-CoA thioesterase -
  C6568_RS07350 (C6568_07350) rpoN/rpoN1 1549669..1551219 (-) 1551 WP_106683529.1 RNA polymerase factor sigma-54 Machinery gene
  C6568_RS07355 (C6568_07355) lptB 1551291..1552070 (-) 780 WP_106683530.1 LPS export ABC transporter ATP-binding protein -
  C6568_RS07360 (C6568_07360) lptA 1552082..1552750 (-) 669 WP_106683531.1 lipopolysaccharide transport periplasmic protein LptA -
  C6568_RS07365 (C6568_07365) - 1552811..1553275 (-) 465 WP_106683532.1 MarR family winged helix-turn-helix transcriptional regulator -
  C6568_RS07370 (C6568_07370) - 1553360..1554334 (+) 975 WP_106683533.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  C6568_RS07375 (C6568_07375) - 1554398..1555729 (+) 1332 WP_106683534.1 sulfatase -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 55597.65 Da        Isoelectric Point: 5.0431

>NTDB_id=278828 C6568_RS07350 WP_106683529.1 1549669..1551219(-) (rpoN/rpoN1) [Melaminivora suipulveris strain SC2-9]
MNRPTLALRASQQLALTPQLQQSIRLLQLSTLELASEVEQMLADNPFLEQDEDDGDAPGPHAAQPAGTPAADAGPEGDAG
AAHDGAAEPAEASELLGAAEPLEWEGEGAGDSDWGHDAPGRSGSSGDGEGELDALELASHHETLAEHLTRQALSLHLAPE
DAAALALLIGSLNDDGYLMDAPAELADALLGDGAWDPERHAELLHRLTVALGLLQSMEPAGVGARDLAECLALQLRARQA
LGQDDAELTRVALAVCRQPLDWLARRDVRRLSHACSADEEATRAAIALIARLEPKPGRRFADVRRMAVVPDVIVKRGGSG
AQQRFAVQLNPAVMPRLRVHELYAGALRTHRGGEGHPQLQARLQEARWFIKNVQQRFDTILRVSDAIVQRQKNFFVHGEL
AMRPLVLRDIAEELGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIRQFVAAEDPAKPLSDS
KIADLLKEQGIECARRTVAKYREALRIAPANLRKTL

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=278828 C6568_RS07350 WP_106683529.1 1549669..1551219(-) (rpoN/rpoN1) [Melaminivora suipulveris strain SC2-9]
ATGAACCGCCCGACGCTGGCGCTGCGCGCCTCGCAGCAGCTCGCCCTGACGCCGCAGCTGCAGCAGTCCATCCGGCTGCT
GCAGCTGTCGACGCTGGAGCTGGCGAGCGAGGTCGAGCAGATGCTGGCCGACAACCCCTTCCTGGAGCAGGACGAGGACG
ACGGTGACGCGCCCGGCCCGCACGCCGCGCAGCCAGCCGGCACGCCCGCCGCCGACGCAGGCCCCGAGGGCGACGCGGGG
GCCGCGCACGACGGCGCCGCCGAGCCGGCCGAAGCCTCCGAGCTGCTGGGCGCCGCTGAACCCCTGGAGTGGGAGGGCGA
AGGCGCCGGTGACAGCGACTGGGGCCACGACGCGCCCGGCCGCTCGGGCAGCAGCGGCGACGGCGAGGGCGAACTCGACG
CGCTGGAGCTGGCCAGCCACCACGAAACACTGGCCGAGCACCTCACGCGCCAGGCGCTGTCCCTGCACCTGGCGCCGGAG
GACGCCGCGGCGCTGGCGCTGCTGATCGGCTCGCTGAACGATGACGGCTACCTGATGGACGCCCCGGCCGAGCTGGCCGA
CGCGCTGCTGGGCGACGGCGCCTGGGACCCCGAGCGCCACGCCGAGCTGCTGCACCGCCTGACCGTGGCCCTGGGTCTGC
TGCAAAGCATGGAGCCGGCGGGCGTGGGCGCGCGCGACCTGGCCGAGTGCCTGGCGCTGCAGCTGCGCGCGCGCCAGGCA
CTCGGCCAGGACGATGCTGAACTCACGCGCGTGGCGCTGGCCGTTTGCCGCCAGCCGCTGGACTGGCTGGCCCGGCGCGA
CGTGCGCCGCCTGTCGCACGCCTGCTCGGCCGATGAAGAGGCGACGCGCGCCGCCATCGCGCTGATCGCGCGGCTGGAGC
CCAAGCCGGGCCGGCGCTTTGCCGACGTGCGCCGCATGGCGGTGGTGCCCGACGTGATCGTCAAGCGCGGCGGCAGCGGC
GCGCAGCAGCGCTTTGCCGTGCAGTTGAACCCGGCCGTCATGCCGCGCCTGCGTGTGCATGAGCTGTACGCCGGCGCGCT
GCGCACGCACCGCGGCGGCGAGGGTCACCCGCAACTGCAGGCGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACGTGC
AGCAGCGCTTCGACACCATCCTGCGCGTCTCGGACGCCATCGTGCAGCGGCAGAAGAATTTTTTCGTGCACGGCGAACTG
GCCATGCGCCCGCTGGTGCTGCGCGACATCGCCGAGGAGCTGGGTCTGCACGAATCGACCATCTCGCGCGTGACCACGGC
CAAGTACATGGCCACGCCGCAGGGCACCTACGAGCTCAAGTATTTTTTCGGCTCGGGCCTGGGCACAGAGACCGGCGGCA
ACGCGTCGAGCACGGCGGTGCGCGCGCTGATCCGCCAGTTCGTCGCCGCCGAGGACCCGGCCAAACCCCTGTCGGACAGC
AAGATCGCCGACCTGCTCAAGGAGCAGGGCATCGAGTGCGCGCGCCGCACGGTGGCCAAGTACCGCGAGGCGCTCAGGAT
CGCGCCCGCCAACCTGCGCAAGACCCTCTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(136-343)

Sigma-54, DNA binding domain (Sigma54_DBD)

(359-514)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(6-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.573

100

0.514

Multiple sequence alignment