Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   C6Y50_RS11190 Genome accession   NZ_CP027664
Coordinates   2368879..2369436 (-) Length   185 a.a.
NCBI ID   WP_106443564.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain 1W1-1A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2363879..2374436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y50_RS11180 (C6Y50_11185) - 2367429..2368034 (-) 606 WP_106442835.1 PilX N-terminal domain-containing pilus assembly protein -
  C6Y50_RS11185 (C6Y50_11190) - 2368031..2368882 (-) 852 WP_045159203.1 PilW family protein -
  C6Y50_RS11190 (C6Y50_11195) pilV 2368879..2369436 (-) 558 WP_106443564.1 type IV pilus modification protein PilV Machinery gene
  C6Y50_RS11195 (C6Y50_11200) - 2369445..2369936 (-) 492 WP_013981877.1 GspH/FimT family pseudopilin -
  C6Y50_RS11200 (C6Y50_11205) - 2370104..2370598 (-) 495 WP_106442836.1 GspH/FimT family pseudopilin -
  C6Y50_RS11205 (C6Y50_11210) thiO 2370751..2371860 (+) 1110 WP_106442837.1 glycine oxidase ThiO -
  C6Y50_RS11210 (C6Y50_11215) - 2372007..2372378 (+) 372 WP_106442838.1 translation initiation factor Sui1 -
  C6Y50_RS11215 (C6Y50_11220) speA 2372501..2374414 (+) 1914 WP_106442839.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20162.90 Da        Isoelectric Point: 4.5666

>NTDB_id=278778 C6Y50_RS11190 WP_106443564.1 2368879..2369436(-) (pilV) [Stutzerimonas stutzeri strain 1W1-1A]
MKTNKGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSVQRNTAILLSGDLIEIIRAHPKELFNTSPPQFPMNSGLKS
SSMFYKEAGSDFIDRESCVASPTRIAQTAKELRDCWADKLEAALPGGAELFDSDTYICRSSTPGSCDGQGSMLEIHMAWQ
VREGACLDSSNTDDTVCTYTVRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=278778 C6Y50_RS11190 WP_106443564.1 2368879..2369436(-) (pilV) [Stutzerimonas stutzeri strain 1W1-1A]
ATGAAAACCAATAAAGGCTTCAGCCTGATCGAAGTGCTCGTAGCGCTACTGCTGACCACTATCGGAGTACTTGGAATGGT
GGCGCTGCAAGGCCGCAGCATCCAATACACCCAGGACTCCGTACAACGCAACACGGCCATTCTTCTGTCCGGAGACCTTA
TCGAAATCATACGGGCACACCCGAAAGAGCTTTTCAACACCTCCCCTCCACAGTTCCCCATGAACAGCGGGTTAAAAAGC
AGCTCGATGTTCTACAAGGAGGCCGGAAGCGATTTCATTGATCGTGAAAGCTGCGTCGCTAGCCCGACCCGAATAGCGCA
GACAGCAAAAGAGTTGCGTGACTGCTGGGCGGACAAGCTGGAAGCGGCGCTACCTGGCGGAGCCGAGCTGTTCGACAGCG
ATACCTACATCTGCCGAAGCTCCACGCCGGGCAGTTGCGACGGCCAGGGCTCGATGCTCGAGATTCATATGGCCTGGCAA
GTTCGAGAAGGCGCCTGTCTCGACTCGAGCAATACCGACGACACCGTCTGCACCTATACCGTTCGGGTAGAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.18

98.919

0.486

Multiple sequence alignment