Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C6Y50_RS09480 Genome accession   NZ_CP027664
Coordinates   2037575..2039695 (+) Length   706 a.a.
NCBI ID   WP_106442740.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain 1W1-1A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2032575..2044695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y50_RS09460 (C6Y50_09465) comM 2034738..2035802 (+) 1065 WP_045159370.1 pilus assembly protein PilM Machinery gene
  C6Y50_RS09465 (C6Y50_09470) pilN 2035802..2036374 (+) 573 WP_011911787.1 type 4a pilus biogenesis protein PilN -
  C6Y50_RS09470 (C6Y50_09475) pilO 2036371..2036997 (+) 627 WP_045632889.1 type 4a pilus biogenesis protein PilO -
  C6Y50_RS09475 (C6Y50_09480) pilP 2036994..2037521 (+) 528 WP_045159373.1 type 4a pilus biogenesis lipoprotein PilP -
  C6Y50_RS09480 (C6Y50_09485) pilQ 2037575..2039695 (+) 2121 WP_106442740.1 type IV pilus secretin PilQ Machinery gene
  C6Y50_RS09485 (C6Y50_09490) aroK 2039699..2040244 (+) 546 WP_017244294.1 shikimate kinase AroK -
  C6Y50_RS09490 (C6Y50_09495) aroB 2040268..2041371 (+) 1104 WP_106442741.1 3-dehydroquinate synthase -
  C6Y50_RS09495 (C6Y50_09500) - 2041382..2042977 (+) 1596 WP_106442742.1 AAA family ATPase -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 75415.59 Da        Isoelectric Point: 4.8070

>NTDB_id=278775 C6Y50_RS09480 WP_106442740.1 2037575..2039695(+) (pilQ) [Stutzerimonas stutzeri strain 1W1-1A]
MNTTLSRLGVSLLAAFISPALLAANLNALDVAALPGDRVELKLAFDEPVASPRGYTLDQPARIALDLPGVSNNLGAKNRE
LGVGNARSVTVVEAQGRTRLIVNLTALVPYSTRVDGNNLFVVLGESSGTTSPAAASAAVTAPIAKSAPVKPMAAGKAIDN
IDFRRGEDGAGNVVITLSDPSVGSTIEEQGGKIRVVFAKAELPEALRVRLDVQDFATPVKFVDSTAQAGGASIAIEPTGR
YDYLAYQTDNKLTISVKPLTEEEADKRKADRFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGNITLRLQNV
PWDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIARLFQSVTSNGGV
VEDRGSIAVDDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANVGYDKALGVRGGGNYGKGNWGLYGKDGA
IGVDEDTGRYGTPHTDKVGNFTLKDALAPVPFVDLGVANSTAGIGIGYVSDYGILDLQLSAMEKTGNGEIVSQPKVVTAD
KETAKILKGAEIPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLV
TDGETIVIGGVFSNSQISSIEKVPFLGDVPFVGRLFRRDIVEDKKSELLVFLTPRILNYRAVAVGQ

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=278775 C6Y50_RS09480 WP_106442740.1 2037575..2039695(+) (pilQ) [Stutzerimonas stutzeri strain 1W1-1A]
ATGAACACTACCCTTTCTCGCCTGGGCGTATCTCTGCTGGCGGCATTTATTTCGCCAGCACTACTGGCGGCCAATCTCAA
CGCCTTGGATGTGGCTGCTTTGCCGGGCGATCGGGTTGAGTTGAAACTGGCATTTGACGAGCCTGTCGCGTCACCTCGTG
GCTACACGCTGGATCAGCCTGCACGCATTGCCCTGGATCTTCCAGGCGTATCCAACAACCTGGGGGCCAAAAACCGGGAG
CTGGGCGTTGGTAATGCGCGCAGCGTAACGGTCGTCGAGGCTCAAGGGCGCACCCGGCTCATCGTCAATCTGACCGCGCT
TGTTCCGTATTCCACTCGAGTGGATGGGAACAATCTGTTTGTCGTGCTGGGAGAGAGCTCGGGGACGACCAGCCCTGCGG
CTGCATCCGCCGCGGTCACTGCTCCGATTGCCAAGTCTGCTCCGGTAAAGCCGATGGCGGCCGGCAAGGCGATCGACAAT
ATCGATTTTCGCCGCGGTGAGGATGGTGCCGGAAACGTGGTAATCACACTGTCCGATCCGTCGGTAGGTTCGACTATCGA
AGAGCAGGGAGGAAAGATCCGCGTTGTGTTCGCCAAGGCGGAGCTGCCTGAAGCACTGCGTGTTCGGCTCGACGTTCAGG
ATTTCGCTACGCCGGTGAAGTTTGTCGACTCGACCGCTCAGGCAGGTGGTGCCAGTATCGCCATCGAGCCTACTGGGCGA
TACGATTATCTCGCCTACCAGACAGACAATAAGCTGACCATCAGCGTAAAGCCTCTTACAGAAGAAGAGGCCGATAAGCG
CAAGGCAGACCGTTTCGCCTATTCCGGTGAAAAACTGTCGCTGAATTTCCAAGATATTGATGTTCGTTCCGTACTGCAGT
TGATCGCTGATTTTACTGACCTGAACTTGGTTGCCAGCGATACCGTCAGTGGCAATATCACCCTTCGTTTGCAGAATGTG
CCTTGGGATCAAGCGCTCGACCTGGTTTTGAAAACCAAGGGGCTGGATAAGCGGCAAGTCGGGAACGTGCTGCTCGTTGC
GCCCGCTGACGAAATCGCCGCGCGTGAACGCCAAGAACTCGAGTCGCAGCGCCAGATTGCCGAGCTTGCACCGTTGCGTC
GCGAGGTCGTGCAAGTCAACTATGCCAAAGCTGCGGACATTGCCCGTTTGTTCCAGTCGGTGACAAGTAATGGTGGTGTC
GTGGAAGATCGCGGTTCCATTGCTGTGGACGACCGTACAAACAATATCATCGCCTACCAAACTCAGGAGCGTCTTGACGA
ACTGCGTCGCATCGTCGCTCAGCTCGACATCCCGGTGCGGCAGGTAATGATTGAGGCTCGTATCGTTGAAGCGAATGTCG
GATACGATAAGGCGCTCGGGGTCCGTGGGGGGGGTAACTATGGTAAAGGTAACTGGGGTTTGTATGGTAAGGATGGTGCT
ATCGGTGTTGACGAGGATACCGGGCGCTATGGGACGCCGCACACTGATAAGGTTGGTAATTTTACCCTAAAGGATGCATT
AGCTCCGGTTCCGTTTGTTGATCTGGGGGTTGCGAATAGCACCGCGGGGATTGGCATTGGTTACGTATCTGACTACGGTA
TCTTGGATCTTCAGTTGTCCGCGATGGAAAAAACCGGTAACGGTGAAATCGTCTCCCAACCAAAGGTGGTTACTGCGGAT
AAAGAAACGGCCAAGATCTTGAAAGGTGCGGAAATCCCCTACCAAGAAGCCAGTTCGAGTGGCGCAACGTCGACATCTTT
CAAGGAGGCAGCCCTGTCGCTTGAGGTGACGCCGCAGATCACGCCGGACAACCGCATCATTATGGAGGTCAAGGTCACCA
AGGATGCCCCTGATTTTGCTAACGCTCTGAATGGCGTGCCGCCGATCAACAAGAATGAAGTCAACGCCAAAGTTCTTGTT
ACCGACGGAGAAACAATCGTCATCGGTGGTGTATTCTCCAACAGCCAGATCAGCAGCATTGAAAAAGTGCCGTTCCTGGG
TGACGTTCCGTTCGTTGGTCGCCTCTTCCGACGGGACATCGTGGAGGATAAAAAATCCGAGCTTTTGGTCTTCTTGACCC
CTAGAATCCTCAACTACCGAGCGGTCGCCGTGGGCCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(541-697)

AMIN domain (AMIN)

(38-123)

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.548

100

0.759
  comQ Acinetobacter baylyi ADP1

41.126

98.159

0.404
  pilQ Acinetobacter baumannii strain A118

39.916

100

0.404
  pilQ Acinetobacter baumannii D1279779

39.916

100

0.404

Multiple sequence alignment