Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   C7A15_RS07480 Genome accession   NZ_CP027658
Coordinates   1568527..1570755 (-) Length   742 a.a.
NCBI ID   WP_161511761.1    Uniprot ID   -
Organism   Acinetobacter pittii strain Ap-W20     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1563527..1575755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A15_RS07460 (C7A15_07505) cbpA 1563716..1564672 (-) 957 WP_005804162.1 DnaJ C-terminal domain-containing protein -
  C7A15_RS07465 (C7A15_07510) leuE 1564819..1565430 (-) 612 WP_002115157.1 LysE family translocator -
  C7A15_RS07470 (C7A15_07515) hslO 1565568..1566443 (-) 876 WP_002114728.1 Hsp33 family molecular chaperone HslO -
  C7A15_RS07475 (C7A15_07520) kefB 1566606..1568450 (-) 1845 WP_002114812.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  C7A15_RS07480 (C7A15_07525) priA 1568527..1570755 (-) 2229 WP_161511761.1 primosomal protein N' Machinery gene
  C7A15_RS07485 (C7A15_07530) gspF 1570904..1572109 (+) 1206 WP_002114712.1 type II secretion system inner membrane protein GspF -
  C7A15_RS07490 (C7A15_07535) gspG 1572133..1572648 (+) 516 WP_019768050.1 type II secretion system major pseudopilin GspG -
  C7A15_RS07495 (C7A15_07540) - 1572915..1573259 (+) 345 WP_002114661.1 hypothetical protein -
  C7A15_RS07500 (C7A15_07545) csaA 1573405..1573743 (+) 339 WP_002114937.1 tRNA-binding protein -
  C7A15_RS07505 (C7A15_07550) lnt 1573745..1575304 (-) 1560 WP_019768049.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84041.80 Da        Isoelectric Point: 8.4592

>NTDB_id=278730 C7A15_RS07480 WP_161511761.1 1568527..1570755(-) (priA) [Acinetobacter pittii strain Ap-W20]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVDPSESFTGTFQLKAISDLL
DEQPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVELAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTLQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=278730 C7A15_RS07480 WP_161511761.1 1568527..1570755(-) (priA) [Acinetobacter pittii strain Ap-W20]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTACATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCATGTAGGCTCACGCGTCGCTATTTCATTTGGACGTCAAAATCTGA
TTGGCATCATTACTGAAAAAGTTGACCCAAGTGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGACCTTTTA
GACGAACAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCTGCCCAGTATTACCAATTTCCGATTGGCGA
GGTCATGCAAACCGCCCTACCTGCGTTATTGCGTCAGGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATCACGC
CATGTGATAATGTTGAAGCACTTCTTAAACGTTCTGTTAAGCAACAAGACGCCTATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAGAACATTCTTAATTTAAGTGGTGTAGAAACGGCTACACTTAAAGCACTTCAAAAGAAAGGACTGGTTGA
CTGTACGCTTGAACCACACGATTTTAGCCCATCGCCTGTTGAATTGGCACAAATGCCGCTCACGCTAAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCGTAAACGCACAGCATCAATACCAAGCTTTTTTATTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTACACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTCCCAGAAATCGGTCT
AACCCTTCAAACGATTTCTCGCTTTAAATCACGTTTTAACTGCGATATTGCCCTATTACACTCGGGCTTAAATGACTCCA
AACGCTTGCAGGCATGGCAACAGGCCCAGACTGGCAAAGCATCTATTATTTTAGGGACACGCTCTGCCATCTATACGCCA
CTGCCACGTTTAGGTCTCATCATTTTAGATGAAGAACATGACCTCTCTTATAAACAGCAAGAAGGCTTCCGTTACCATGC
GCGTGATGTCGCACTTTATCGAGGTCACTTGCAAAACTGCCCTGTTATTTTAGGTTCAGCAACACCGAGCATCGATAGTT
ATTATTTGGTCGAAACTGGCAAATTAACTTCACTGCAACTTAATCAACGTGCAGGCCATGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTTTAATCGAACAGATTAAAAATACCCTAGCTAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTCTGTGAAAGTTGTGGATGGCAAGCAA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGTACTGTT
CATCGCTTGCCCGATCACTGCCCTGAATGCCAGCAAAAAAGCCTAAAAACCTTAGGTGCTGGAACGGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGGGTTGATCGTGACAGTACCAGTCGTGTGGGTAGCTGGCAAA
AAATCTATGACCGTATTCATCAAAACAAACCAACAATTTTACTCGGCACTCAAATGTTGGCAAAAGGTCATCATTTCCCA
CACGTAACTTTGGTTGCTATTTTAGACATTGATGCTGGGTTACTGAGTGTCGATATTCGTGCGCCAGAGCGTACTGCGCA
ATTAATTGTACAAGTCGCTGGTCGTGCAGGTCGTGGTGAACACAAAGGCCATGTTTATTTACAGACCTTAAGACCAGATC
ACCCTTTACTAACCACACTCATCGAAAAAGATTATCGGGCGGTTGCTAAACAGACTCTTGCGGAACGTAAAGTCGCATTG
CTGCCACCTTATCGTTATGCAGTACTGATACGTGCAGAATCTAAAGATCGTGACTATACCTTACATTTTTTAAATGAAGC
GGCGGAACAATTACGCCAAATTGCAGGTGAAATTGTTGATATTTGGGGTCCGATTCCAGCACCGATGGAACGTAAAGCTG
GGCGCTACCGCGCCCACATGGTGATTTTATCTGCTGACCGTGCTCGCCTACATTTTTACTTAAGACAATGGTGGTCACAA
TTGGTTCATGCACCACGGCAGCATCAACTTAGGCTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

98.113

100

0.981

Multiple sequence alignment