Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C7A17_RS07370 Genome accession   NZ_CP027657
Coordinates   1596153..1598234 (-) Length   693 a.a.
NCBI ID   WP_106742795.1    Uniprot ID   A0A2R3QWV2
Organism   Ectopseudomonas mendocina strain NEB698     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1591153..1603234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS07355 (C7A17_07355) - 1592898..1594463 (-) 1566 WP_106737409.1 AAA family ATPase -
  C7A17_RS07360 (C7A17_07360) aroB 1594474..1595577 (-) 1104 WP_106737410.1 3-dehydroquinate synthase -
  C7A17_RS07365 (C7A17_07365) aroK 1595629..1596147 (-) 519 WP_106737411.1 shikimate kinase AroK -
  C7A17_RS07370 (C7A17_07370) pilQ 1596153..1598234 (-) 2082 WP_106742795.1 type IV pilus secretin PilQ family protein Machinery gene
  C7A17_RS07375 (C7A17_07375) pilP 1598292..1598816 (-) 525 WP_106737412.1 type 4a pilus biogenesis lipoprotein PilP -
  C7A17_RS07380 (C7A17_07380) pilO 1598816..1599436 (-) 621 WP_106737413.1 type 4a pilus biogenesis protein PilO -
  C7A17_RS07385 (C7A17_07385) pilN 1599433..1600005 (-) 573 WP_106737414.1 type 4a pilus biogenesis protein PilN -
  C7A17_RS07390 (C7A17_07390) pilM 1600005..1601069 (-) 1065 WP_106737415.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 74845.74 Da        Isoelectric Point: 4.6635

>NTDB_id=278675 C7A17_RS07370 WP_106742795.1 1596153..1598234(-) (pilQ) [Ectopseudomonas mendocina strain NEB698]
MNSSLSRFSVALLISLSSPFLLAASLQSLDVASLPGDRVELKLAFDEPVVAPRGYTIEQPARIAIDLPGVSNKLGTKNRE
LGVGNARSVTFVEAKDRTRLIVNLMSLVPYATRVEGNNLYVLIGVAEAASSVASASTPVVQPLSALRQPLGVSTGKSVSN
IDFQRGEQGEGNVVITLSDSSVSPNIQEQGGKIRLDFAKTQLPESLRVRLDVKDFATPVQFVSASSIGGGASVVIEPVGL
YDYLAYQTENKLTLSVKPLSQDDAERRKIERFSYAGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGSITLRLQNV
PWDQALDLVLKTKGLDQRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELIQVNYAKASDMATLFQSVANIEEG
GGDRGSITVDDRTNSIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKALGVRWGGTKVFGGGKWVGYGND
DNGDEGGNSGEDSNGNFPFVDLGVANRTSGIGIGFVTDNTILDLELSAMEKTGNGEIVSQPKVVTADKETAKILKGTEVP
YQEASSSGATTVSFKEAALALEVTPQITPDNRIIIEVKVNKDEPDYNNAVLGVPPIKKNEVNAKVLVSDGETIVIGGVYS
NTQSKTVDKVPFLGDLPYVGRVFRRDSVTDQKSELLIFLTPRILNTQAIAVNR

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=278675 C7A17_RS07370 WP_106742795.1 1596153..1598234(-) (pilQ) [Ectopseudomonas mendocina strain NEB698]
ATGAATAGCTCCCTGTCGCGTTTCAGCGTTGCATTGTTGATTTCGCTATCTTCTCCTTTTTTATTGGCTGCAAGCCTACA
GTCGCTAGATGTAGCAAGTTTGCCGGGGGATAGGGTTGAGCTCAAGCTTGCCTTTGATGAGCCAGTTGTGGCGCCGCGCG
GCTATACAATTGAGCAGCCTGCACGCATCGCTATCGACTTGCCAGGCGTATCCAATAAACTTGGTACTAAGAATAGAGAG
CTTGGAGTGGGTAATGCGCGAAGTGTTACCTTTGTGGAGGCTAAGGATAGAACCCGTCTAATTGTCAACTTGATGAGTCT
TGTGCCATATGCGACGCGAGTCGAGGGCAACAATCTTTATGTTCTTATCGGTGTTGCAGAGGCGGCAAGTTCTGTGGCAT
CTGCTTCGACTCCAGTGGTGCAACCTTTGTCTGCTCTTCGTCAGCCTTTAGGAGTGTCCACTGGTAAATCGGTAAGTAAT
ATCGATTTTCAGCGTGGCGAGCAGGGGGAGGGGAATGTAGTTATTACTCTATCCGACTCTTCTGTGAGCCCAAATATTCA
AGAGCAGGGCGGGAAGATTCGTCTTGACTTCGCTAAAACTCAGCTGCCCGAGTCCCTACGTGTGAGACTGGATGTAAAAG
ATTTTGCCACCCCCGTGCAATTTGTCAGTGCTAGTAGCATAGGGGGCGGGGCGAGTGTGGTGATTGAGCCGGTTGGGCTC
TATGATTATCTCGCCTACCAAACAGAGAATAAGTTGACTTTGAGTGTGAAGCCTCTGAGTCAGGATGATGCTGAGCGCCG
AAAGATTGAGCGTTTTTCGTACGCAGGTGAGAAACTGTCGCTGAACTTTCAGGATATTGACGTTCGGTCGGTTTTGCAAT
TAATTGCAGATTTTACCGATTTGAATCTTGTGGCTAGCGATACAGTATCTGGGAGTATTACGCTGCGGCTGCAGAATGTG
CCGTGGGATCAGGCCCTGGATCTTGTGTTGAAGACTAAGGGTTTGGATCAGAGAAAAATTGGTAATGTTTTGCTCGTTGC
TCCAGCGGATGAAATAGCTGCGCGTGAGCGTCAAGAGTTAGAGTCGCAAAAGCAGATTGCAGAATTGGCTCCGTTGCGTA
GAGAGTTAATTCAAGTTAACTACGCTAAAGCTTCTGATATGGCTACTCTCTTCCAGTCTGTTGCTAATATTGAGGAGGGC
GGCGGGGATCGGGGGTCTATTACTGTTGATGATCGCACTAATAGTATTATTGCTTATCAAACTCAAGATCGATTGGATGA
GTTGAGGCGAATTGTTGCTCAGCTGGATATACCTGTGCGTCAAGTTATGATTGAAGCTCGAATTGTCGAGGCCAACGTCG
ATTATGATAAGGCCTTGGGTGTGCGTTGGGGTGGGACAAAGGTATTTGGTGGTGGTAAGTGGGTCGGTTATGGGAATGAT
GATAACGGTGATGAGGGTGGAAATTCAGGTGAGGACTCGAATGGTAATTTCCCCTTTGTTGACCTTGGTGTGGCTAATCG
AACTTCTGGCATAGGCATCGGTTTTGTTACTGATAATACCATTCTCGATCTTGAGCTTTCTGCAATGGAGAAGACCGGTA
ATGGTGAAATTGTCTCTCAGCCCAAGGTTGTGACTGCGGACAAAGAAACAGCCAAGATTCTCAAAGGCACTGAGGTTCCA
TACCAAGAGGCAAGCTCAAGTGGCGCGACCACTGTTTCCTTCAAGGAGGCTGCTTTGGCTCTTGAAGTAACCCCGCAAAT
TACGCCTGATAACCGAATTATTATTGAGGTAAAAGTCAATAAGGATGAGCCTGATTACAATAATGCAGTTTTAGGTGTTC
CGCCAATTAAGAAGAATGAGGTTAATGCTAAGGTTCTTGTTTCGGATGGTGAGACGATTGTTATTGGTGGTGTTTATTCC
AATACCCAGTCGAAGACAGTTGATAAGGTTCCGTTCTTGGGCGATTTACCGTACGTCGGGAGAGTATTTCGTCGAGATTC
GGTCACCGATCAAAAATCGGAGCTGCTTATCTTTCTGACGCCGCGTATCCTAAATACTCAAGCCATTGCCGTGAATCGAT
GA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-441)

Bacterial type II and III secretion system protein (Secretin)

(528-684)

Secretin and TonB N terminus short domain (STN)

(302-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3QWV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.816

100

0.765
  pilQ Acinetobacter baumannii strain A118

39.435

100

0.423
  pilQ Acinetobacter baumannii D1279779

39.435

100

0.423
  comQ Acinetobacter baylyi ADP1

41.254

98.99

0.408
  pilQ Legionella pneumophila strain Lp02

37.243

98.413

0.367
  pilQ Legionella pneumophila strain ERS1305867

37.481

97.403

0.365

Multiple sequence alignment