Detailed information NTG0027865

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECDH10B_RS14775
• Genome accession: NC_010473
• Coordinates: 2957123..2958115 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli str. K-12 substr. DH10B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2952123..2963115

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECDH10B_RS14755 (ECDH10B_2905)	otnK	2952899..2954065 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
ECDH10B_RS14760	ygbL	2954157..2954795 (+)	639	WP_001278991.1	aldolase	-
ECDH10B_RS14765 (ECDH10B_2907)	ygbM	2954800..2955576 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ECDH10B_RS14770 (ECDH10B_2908)	ygbN	2955665..2957029 (+)	1365	WP_000104441.1	GntP family transporter	-
ECDH10B_RS14775 (ECDH10B_2909)	rpoS	2957123..2958115 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
ECDH10B_RS14780 (ECDH10B_2910)	nlpD	2958178..2959272 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ECDH10B_RS14785 (ECDH10B_2911)	pcm	2959457..2960083 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECDH10B_RS14790 (ECDH10B_2912)	surE	2960077..2960838 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECDH10B_RS14795 (ECDH10B_2913)	truD	2960819..2961868 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ECDH10B_RS14800 (ECDH10B_2914)	ispF	2961865..2962344 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECDH10B_RS14805 (ECDH10B_2915)	ispD	2962344..2963054 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=27865 ECDH10B_RS14775 WP_000081588.1 2957123..2958115(-) (rpoS) [Escherichia coli str. K-12 substr. DH10B]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=27865 ECDH10B_RS14775 WP_000081588.1 2957123..2958115(-) (rpoS) [Escherichia coli str. K-12 substr. DH10B]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715