Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IBB3154_RS06975 Genome accession   NZ_CP027644
Coordinates   1385917..1387290 (-) Length   457 a.a.
NCBI ID   WP_081538145.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain IBB3154     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380917..1392290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB3154_RS06955 (IBB3154_1372) - 1381195..1381602 (-) 408 WP_003700685.1 Mini-ribonuclease 3 -
  IBB3154_RS06960 (IBB3154_1373) cysS 1381595..1383007 (-) 1413 WP_081538144.1 cysteine--tRNA ligase -
  IBB3154_RS06965 (IBB3154_1374) gltX 1383161..1384648 (-) 1488 WP_003700687.1 glutamate--tRNA ligase -
  IBB3154_RS06970 (IBB3154_1375) - 1384779..1385891 (-) 1113 WP_003700688.1 PIN/TRAM domain-containing protein -
  IBB3154_RS06975 (IBB3154_1376) radA 1385917..1387290 (-) 1374 WP_081538145.1 DNA repair protein RadA Machinery gene
  IBB3154_RS06980 (IBB3154_1377) - 1387308..1387844 (-) 537 WP_003706510.1 dUTP diphosphatase -
  IBB3154_RS06985 (IBB3154_1378) - 1388000..1388278 (+) 279 WP_164480088.1 GNAT family N-acetyltransferase -
  IBB3154_RS06990 (IBB3154_1379) - 1388367..1389701 (+) 1335 WP_003706508.1 aminopeptidase C -
  IBB3154_RS06995 (IBB3154_1380) - 1389911..1390264 (+) 354 WP_003710547.1 bacteriocin immunity protein -
  IBB3154_RS07000 (IBB3154_1381) - 1390435..1391109 (-) 675 WP_003706506.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  IBB3154_RS07005 (IBB3154_1382) - 1391131..1392075 (-) 945 WP_160944262.1 AEC family transporter -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49750.39 Da        Isoelectric Point: 8.0259

>NTDB_id=278635 IBB3154_RS06975 WP_081538145.1 1385917..1387290(-) (radA) [Ligilactobacillus salivarius strain IBB3154]
MAKTKTRYVCQNCEYISPRYLGRCPNCGSWNSLVEEIEKRESSTKAQPRVSISGTTVKPKLIDDVSTVETPRFKTNLEEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLSTLGKKVLYVSGEESATQIKLRADRLGVHGTELYLYPETDMDSIR
KNIELLKPDFVVIDSVQTMQEPEMTAAVGSVSQIREVTGDLMQIAKTNGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDQHRTFRILRAVKNRFGSTNEIGIFEMKNGGLSEVANPSEIFLEERLKGATGSAVVASLEGTRPILVELQALVTPTAF
GNAKRTTTGLDHNRVALLMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSLVSSYRDAETRPTDCFIGEVGLT
GEIRRVNRIEQRVVEAAKLGFKRVFLPKNNLDGWMPPKEIEVVGVSTLNQALKLIFS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=278635 IBB3154_RS06975 WP_081538145.1 1385917..1387290(-) (radA) [Ligilactobacillus salivarius strain IBB3154]
TTGGCGAAAACTAAGACAAGATATGTTTGTCAAAATTGTGAATATATCTCTCCACGCTATTTAGGACGCTGCCCTAATTG
TGGTTCTTGGAATAGCTTGGTAGAGGAAATAGAGAAAAGGGAAAGTTCAACTAAAGCACAGCCTAGAGTTAGTATCTCTG
GTACAACAGTGAAACCTAAATTAATTGATGATGTTTCTACTGTAGAAACTCCAAGATTTAAAACTAATTTAGAAGAATTG
AATCGTGTTTTAGGTGGCGGAATCGTTCCAGGATCTTTAGTGTTAATTGGTGGAGATCCAGGTATTGGTAAGTCTACATT
ATTACTACAAGTTTCTGGGCAATTATCTACTCTCGGGAAAAAGGTTCTTTATGTTTCTGGAGAAGAAAGTGCAACTCAAA
TTAAATTACGTGCGGATCGTTTAGGAGTTCATGGAACTGAGCTATATTTATATCCCGAAACAGATATGGATAGTATTAGA
AAAAATATTGAACTTTTAAAGCCTGATTTTGTTGTAATCGATTCGGTGCAGACAATGCAGGAGCCAGAAATGACAGCCGC
AGTTGGAAGTGTTTCTCAAATTAGGGAAGTAACTGGAGATTTGATGCAAATTGCGAAAACTAATGGGATAACTGTCTTTG
TTGTAGGACATGTTACTAAAGGTGGAGCAATTGCAGGACCTAAAATTTTAGAACATATGGTAGATACTGTTCTTTATTTT
GAGGGAGATCAACATAGAACATTTAGAATTTTACGAGCTGTTAAAAATAGATTTGGTTCAACTAATGAAATTGGAATCTT
TGAAATGAAAAATGGAGGATTAAGCGAAGTTGCTAATCCATCAGAGATTTTTCTAGAAGAAAGATTAAAAGGGGCTACGG
GATCAGCAGTCGTTGCTTCGCTTGAAGGGACTAGGCCTATATTGGTAGAATTACAAGCACTAGTAACACCGACTGCATTT
GGAAATGCTAAGCGAACAACAACTGGTTTAGATCATAATCGAGTTGCGTTACTGATGGCGGTACTTGAAAAAAGAGCGGG
TTTGTTATTACAAAATCAGGATGCTTATTTGAAGGCCGCTGGTGGAGTGAAGTTAGATGAGCCAGCAATAGATTTAGCCA
TTGCTGTTAGTTTAGTTTCTAGTTATCGCGATGCAGAAACAAGACCAACTGACTGTTTTATAGGGGAAGTGGGATTAACT
GGTGAAATAAGACGAGTTAATCGTATTGAACAGCGTGTTGTTGAAGCTGCTAAGCTAGGATTTAAGCGAGTATTTTTACC
AAAGAACAACTTAGATGGTTGGATGCCTCCAAAAGAGATTGAAGTAGTAGGCGTAAGTACACTAAATCAAGCATTAAAAC
TAATTTTTAGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

68.49

100

0.685
  radA Streptococcus mitis SK321

68.271

100

0.683
  radA Streptococcus pneumoniae Rx1

68.271

100

0.683
  radA Streptococcus pneumoniae D39

68.271

100

0.683
  radA Streptococcus pneumoniae R6

68.271

100

0.683
  radA Streptococcus pneumoniae TIGR4

68.271

100

0.683
  radA Bacillus subtilis subsp. subtilis str. 168

65.342

99.125

0.648

Multiple sequence alignment