Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECDH10B_RS14295 Genome accession   NC_010473
Coordinates   2866173..2866655 (+) Length   160 a.a.
NCBI ID   WP_001407480.1    Uniprot ID   P52140
Organism   Escherichia coli str. K-12 substr. DH10B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2861173..2871655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECDH10B_RS26525 - 2861789..2861941 (-) 153 Protein_2768 glutaredoxin domain-containing protein -
  ECDH10B_RS14280 - 2861954..2862963 (-) 1010 Protein_2769 arsenic transporter -
  ECDH10B_RS14285 (ECDH10B_2809) yfjW 2863105..2864808 (+) 1704 WP_000896263.1 protein YfjW -
  ECDH10B_RS24540 - 2865380..2865603 (+) 224 Protein_2771 DUF905 family protein -
  ECDH10B_RS14290 (ECDH10B_2810) yfjX 2865706..2866164 (+) 459 WP_000211841.1 antirestriction protein -
  ECDH10B_RS14295 (ECDH10B_2811) radC 2866173..2866655 (+) 483 WP_001407480.1 RadC family protein Machinery gene
  ECDH10B_RS24545 (ECDH10B_2812) ypjJ 2866664..2866864 (+) 201 WP_001395452.1 DUF987 domain-containing protein -
  ECDH10B_RS14300 (ECDH10B_2813) yfjZ 2866902..2867219 (+) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECDH10B_RS14305 (ECDH10B_2814) ypjF 2867240..2867569 (+) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=27861 ECDH10B_RS14295 WP_001407480.1 2866173..2866655(+) (radC) [Escherichia coli str. K-12 substr. DH10B]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=27861 ECDH10B_RS14295 WP_001407480.1 2866173..2866655(+) (radC) [Escherichia coli str. K-12 substr. DH10B]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375

Multiple sequence alignment