Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   D8Z68_RS06355 Genome accession   NZ_CP032808
Coordinates   1263703..1264440 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ERL04-3476     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1258703..1269440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8Z68_RS06325 (D8Z68_06475) yfiL 1258861..1259226 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  D8Z68_RS06330 (D8Z68_06480) aroF 1259436..1260506 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  D8Z68_RS06335 (D8Z68_06485) tyrA 1260517..1261638 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  D8Z68_RS06340 (D8Z68_06490) pheA 1261681..1262841 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  D8Z68_RS06345 (D8Z68_06495) pheL 1262940..1262987 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  D8Z68_RS06350 (D8Z68_06500) raiA 1263091..1263432 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  D8Z68_RS06355 (D8Z68_06510) comL 1263703..1264440 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  D8Z68_RS06360 (D8Z68_06515) rluD 1264575..1265555 (+) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D8Z68_RS06365 (D8Z68_06520) yfiH 1265552..1266283 (+) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  D8Z68_RS06370 (D8Z68_06525) clpC 1266413..1268986 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=278600 D8Z68_RS06355 WP_000197686.1 1263703..1264440(-) (comL) [Escherichia coli strain ERL04-3476]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=278600 D8Z68_RS06355 WP_000197686.1 1263703..1264440(-) (comL) [Escherichia coli strain ERL04-3476]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment