Detailed information NTG0278588

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: DSM101856_RS05690
• Genome accession: NZ_CP027639
• Coordinates: 1098273..1099217 (+)
• Length: 314 a.a.
• NCBI ID: WP_052774038.1
• Uniprot ID: -
• Organism: Campylobacter coli strain meC0280
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1093273..1104217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DSM101856_RS05655 (DSM101856_01137)	-	1094407..1095342 (-)	936	WP_002777223.1	glycosyltransferase family 2 protein	-
DSM101856_RS05660 (DSM101856_01138)	-	1095484..1096224 (-)	741	WP_193228005.1	class I SAM-dependent methyltransferase	-
DSM101856_RS09155 (DSM101856_01139)	-	1096316..1096450 (+)	135	WP_002777225.1	alpha-2,3-sialyltransferase	-
DSM101856_RS09160 (DSM101856_01140)	-	1096673..1096909 (+)	237	WP_255296982.1	alpha-2,3-sialyltransferase	-
DSM101856_RS05685 (DSM101856_01141)	-	1097393..1098214 (-)	822	WP_032685539.1	glycosyltransferase family 2 protein	-
DSM101856_RS05690 (DSM101856_01142)	waaF	1098273..1099217 (+)	945	WP_052774038.1	lipopolysaccharide heptosyltransferase II	Regulator
DSM101856_RS05695 (DSM101856_01143)	-	1099210..1099971 (-)	762	WP_002826801.1	glycosyltransferase family 25 protein	-
DSM101856_RS05700 (DSM101856_01144)	gmhA	1099971..1100531 (-)	561	WP_193228006.1	D-sedoheptulose 7-phosphate isomerase	-
DSM101856_RS05705 (DSM101856_01145)	rfaE1	1100528..1101913 (-)	1386	WP_087691939.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
DSM101856_RS05710 (DSM101856_01146)	rfaD	1101906..1102859 (-)	954	WP_193228007.1	ADP-glyceromanno-heptose 6-epimerase	-
DSM101856_RS05715 (DSM101856_01147)	-	1102856..1103419 (-)	564	WP_002787747.1	HAD family hydrolase	-
DSM101856_RS05720 (DSM101856_01148)	-	1103496..1103795 (+)	300	WP_002777238.1	cytochrome c	-
DSM101856_RS05725 (DSM101856_01149)	-	1103825..1104025 (-)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36095.63 Da
• Isoelectric Point: 10.2686

>NTDB_id=278588 DSM101856_RS05690 WP_052774038.1 1098273..1099217(+) (waaF) [Campylobacter coli strain meC0280]
MKVFIHLPTWLGDAVMTSPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKVKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT

Nucleotide

• Length: 945 bp

>NTDB_id=278588 DSM101856_RS05690 WP_052774038.1 1098273..1099217(+) (waaF) [Campylobacter coli strain meC0280]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGACCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCCAAGATCATTTTACACATCCTTAAGGTAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (106-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	82.748	99.682	0.825