Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   DSM101856_RS03125 Genome accession   NZ_CP027639
Coordinates   613339..613785 (+) Length   148 a.a.
NCBI ID   WP_032685882.1    Uniprot ID   -
Organism   Campylobacter coli strain meC0280     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 608339..618785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM101856_RS03105 (DSM101856_00628) - 609292..610715 (+) 1424 Protein_602 anaerobic C4-dicarboxylate transporter -
  DSM101856_RS03110 (DSM101856_00629) uvrB 610750..612723 (-) 1974 WP_193228141.1 excinuclease ABC subunit UvrB -
  DSM101856_RS03115 (DSM101856_00630) - 612877..613107 (+) 231 WP_002776426.1 hypothetical protein -
  DSM101856_RS03120 (DSM101856_00631) - 613097..613342 (+) 246 WP_002776428.1 hypothetical protein -
  DSM101856_RS03125 (DSM101856_00632) Cj0683 613339..613785 (+) 447 WP_032685882.1 type II secretion system protein Machinery gene
  DSM101856_RS03130 (DSM101856_00633) - 613782..615620 (+) 1839 WP_002787399.1 primosomal protein N' -
  DSM101856_RS03135 (DSM101856_00634) ispG 615680..616753 (+) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  DSM101856_RS03140 (DSM101856_00635) flgH 616837..617535 (-) 699 WP_002842806.1 flagellar basal body L-ring protein FlgH -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17303.13 Da        Isoelectric Point: 7.6247

>NTDB_id=278583 DSM101856_RS03125 WP_032685882.1 613339..613785(+) (Cj0683) [Campylobacter coli strain meC0280]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQEE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=278583 DSM101856_RS03125 WP_032685882.1 613339..613785(+) (Cj0683) [Campylobacter coli strain meC0280]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTAGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAGAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.432

100

0.574

Multiple sequence alignment