Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   DSM104627_RS05395 Genome accession   NZ_CP027638
Coordinates   1077071..1077517 (-) Length   148 a.a.
NCBI ID   WP_002776437.1    Uniprot ID   A0A0Q2LSM9
Organism   Campylobacter coli strain meC0467     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1072071..1082517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104627_RS05380 (DSM104627_01092) flgH 1073321..1074019 (+) 699 WP_002787400.1 flagellar basal body L-ring protein FlgH -
  DSM104627_RS05385 (DSM104627_01093) ispG 1074103..1075176 (-) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  DSM104627_RS05390 (DSM104627_01094) - 1075236..1077074 (-) 1839 WP_002776439.1 primosomal protein N' -
  DSM104627_RS05395 (DSM104627_01095) Cj0683 1077071..1077517 (-) 447 WP_002776437.1 type II secretion system protein Machinery gene
  DSM104627_RS05400 (DSM104627_01096) - 1077514..1077759 (-) 246 WP_002776428.1 hypothetical protein -
  DSM104627_RS05405 (DSM104627_01097) - 1077749..1077979 (-) 231 WP_002776426.1 hypothetical protein -
  DSM104627_RS05410 (DSM104627_01098) uvrB 1078133..1080106 (+) 1974 WP_002844764.1 excinuclease ABC subunit UvrB -
  DSM104627_RS05415 (DSM104627_01099) - 1080141..1081565 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17302.19 Da        Isoelectric Point: 8.4538

>NTDB_id=278574 DSM104627_RS05395 WP_002776437.1 1077071..1077517(-) (Cj0683) [Campylobacter coli strain meC0467]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=278574 DSM104627_RS05395 WP_002776437.1 1077071..1077517(-) (Cj0683) [Campylobacter coli strain meC0467]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2LSM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.108

100

0.581

Multiple sequence alignment