Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | DSM104627_RS03115 | Genome accession | NZ_CP027638 |
| Coordinates | 622651..623595 (-) | Length | 314 a.a. |
| NCBI ID | WP_002844797.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain meC0467 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 617651..628595
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSM104627_RS03080 (DSM104627_00629) | - | 617843..618043 (+) | 201 | WP_002777240.1 | cbb3-type cytochrome oxidase assembly protein | - |
| DSM104627_RS03085 (DSM104627_00630) | - | 618073..618372 (-) | 300 | WP_002777238.1 | cytochrome c | - |
| DSM104627_RS03090 (DSM104627_00631) | - | 618449..619012 (+) | 564 | WP_002777235.1 | HAD family hydrolase | - |
| DSM104627_RS03095 (DSM104627_00632) | rfaD | 619009..619962 (+) | 954 | WP_002796912.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| DSM104627_RS03100 (DSM104627_00633) | rfaE1 | 619955..621340 (+) | 1386 | WP_002844795.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| DSM104627_RS03105 (DSM104627_00634) | gmhA | 621337..621897 (+) | 561 | WP_002806601.1 | D-sedoheptulose 7-phosphate isomerase | - |
| DSM104627_RS03110 | - | 621897..622658 (+) | 762 | Protein_606 | glycosyltransferase family 25 protein | - |
| DSM104627_RS03115 (DSM104627_00636) | waaF | 622651..623595 (-) | 945 | WP_002844797.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| DSM104627_RS03120 (DSM104627_00637) | - | 623655..624476 (+) | 822 | WP_002844798.1 | glycosyltransferase family 2 protein | - |
| DSM104627_RS03125 (DSM104627_00638) | - | 624519..625886 (+) | 1368 | WP_002844799.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| DSM104627_RS03130 (DSM104627_00639) | gmd | 625887..627026 (+) | 1140 | WP_002844800.1 | GDP-mannose 4,6-dehydratase | - |
| DSM104627_RS03135 (DSM104627_00640) | - | 627019..627957 (+) | 939 | WP_002844801.1 | NAD-dependent epimerase/dehydratase family protein | - |
Sequence
Protein
Download Length: 314 a.a. Molecular weight: 36096.73 Da Isoelectric Point: 10.3770
>NTDB_id=278570 DSM104627_RS03115 WP_002844797.1 622651..623595(-) (waaF) [Campylobacter coli strain meC0467]
MKIFIHLPTWLGDAVMASPALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQTLSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFRLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKMLCQNIIFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLACMPCMQKTCPLKHHQCMKDLKPEKILEAIRNFT
MKIFIHLPTWLGDAVMASPALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQTLSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFRLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKMLCQNIIFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLACMPCMQKTCPLKHHQCMKDLKPEKILEAIRNFT
Nucleotide
Download Length: 945 bp
>NTDB_id=278570 DSM104627_RS03115 WP_002844797.1 622651..623595(-) (waaF) [Campylobacter coli strain meC0467]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAACCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCTCTTTCCTCTAAGATCATTTTGCATATCCTTAAGGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAGATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCGGGCAAGGCAGAACAAGAACTTTGCGATGAAATTTTTCATATATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACCATCAAAATGCTTTGTCAAAATATCATTTTTTGTGATATCTTCATCACAAATGATAGT
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTAGCTTGTATGCCTTGCATGCAAAAAACCTGCCCTTTAAAAC
ATCATCAGTGTATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCGAAATTTTACTTAA
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAACCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCTCTTTCCTCTAAGATCATTTTGCATATCCTTAAGGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAGATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCGGGCAAGGCAGAACAAGAACTTTGCGATGAAATTTTTCATATATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACCATCAAAATGCTTTGTCAAAATATCATTTTTTGTGATATCTTCATCACAAATGATAGT
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTAGCTTGTATGCCTTGCATGCAAAAAACCTGCCCTTTAAAAC
ATCATCAGTGTATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCGAAATTTTACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
82.748 |
99.682 |
0.825 |