Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | DSM104626_RS03450 | Genome accession | NZ_CP027634 |
| Coordinates | 671094..672044 (-) | Length | 316 a.a. |
| NCBI ID | WP_031263832.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain meC0281 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 666094..677044
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSM104626_RS03415 (DSM104626_00687) | - | 666290..666490 (+) | 201 | WP_002777240.1 | cbb3-type cytochrome oxidase assembly protein | - |
| DSM104626_RS03420 (DSM104626_00688) | - | 666520..666819 (-) | 300 | WP_002777238.1 | cytochrome c | - |
| DSM104626_RS03425 (DSM104626_00689) | - | 666896..667459 (+) | 564 | WP_002787747.1 | HAD family hydrolase | - |
| DSM104626_RS03430 (DSM104626_00690) | rfaD | 667456..668409 (+) | 954 | WP_023890814.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| DSM104626_RS03435 (DSM104626_00691) | rfaE1 | 668402..669787 (+) | 1386 | WP_002872241.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| DSM104626_RS03440 (DSM104626_00692) | gmhA | 669784..670344 (+) | 561 | WP_023890815.1 | D-sedoheptulose 7-phosphate isomerase | - |
| DSM104626_RS03445 (DSM104626_00693) | - | 670344..671108 (+) | 765 | Protein_671 | glycosyltransferase family 25 protein | - |
| DSM104626_RS03450 (DSM104626_00694) | waaF | 671094..672044 (-) | 951 | WP_031263832.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| DSM104626_RS03455 (DSM104626_00695) | - | 672103..672939 (+) | 837 | WP_031263834.1 | glycosyltransferase family 2 protein | - |
| DSM104626_RS03460 (DSM104626_00696) | rfbA | 672949..673827 (+) | 879 | WP_002837567.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| DSM104626_RS03465 (DSM104626_00697) | rfbB | 673831..674862 (+) | 1032 | WP_023890819.1 | dTDP-glucose 4,6-dehydratase | - |
| DSM104626_RS03470 (DSM104626_00698) | - | 674859..675254 (+) | 396 | WP_002794360.1 | FdtA/QdtA family cupin domain-containing protein | - |
| DSM104626_RS03475 (DSM104626_00699) | - | 675251..675922 (+) | 672 | WP_002794362.1 | acetyltransferase | - |
| DSM104626_RS03480 (DSM104626_00700) | - | 675926..676840 (+) | 915 | WP_002794364.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36197.94 Da Isoelectric Point: 10.3698
>NTDB_id=278546 DSM104626_RS03450 WP_031263832.1 671094..672044(-) (waaF) [Campylobacter coli strain meC0281]
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIIENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIIENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
Nucleotide
Download Length: 951 bp
>NTDB_id=278546 DSM104626_RS03450 WP_031263832.1 671094..672044(-) (waaF) [Campylobacter coli strain meC0281]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACGGCACTTTTTAAAGAATTTCCTAATGCTAAAATCA
TTATAGAAAATAAAAAATCACGCTACAAGCAAGCCCTCTCTTTGCGTAAAAAACTTGGAAAAATAGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCTTCCAAGATCATTTTGCACATCCTGAAAGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACGGCACTTTTTAAAGAATTTCCTAATGCTAAAATCA
TTATAGAAAATAAAAAATCACGCTACAAGCAAGCCCTCTCTTTGCGTAAAAAACTTGGAAAAATAGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCTTCCAAGATCATTTTGCACATCCTGAAAGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
82.803 |
99.367 |
0.823 |