Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DSM104626_RS02035 Genome accession   NZ_CP027634
Coordinates   413232..414200 (-) Length   322 a.a.
NCBI ID   WP_200408850.1    Uniprot ID   -
Organism   Campylobacter coli strain meC0281     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 408232..419200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104626_RS02015 (DSM104626_00404) - 409747..410379 (-) 633 WP_200408849.1 hypothetical protein -
  DSM104626_RS02020 (DSM104626_00405) - 410545..411534 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  DSM104626_RS02025 (DSM104626_00406) - 411549..412304 (-) 756 WP_002780521.1 ATP-binding cassette domain-containing protein -
  DSM104626_RS02030 (DSM104626_00407) - 412301..413239 (-) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  DSM104626_RS02035 (DSM104626_00408) ceuB 413232..414200 (-) 969 WP_200408850.1 ABC transporter permease Machinery gene
  DSM104626_RS02040 (DSM104626_00409) - 414333..415328 (-) 996 WP_002825231.1 phospholipase A -
  DSM104626_RS02045 (DSM104626_00410) - 415325..415900 (-) 576 WP_200408851.1 molybdenum cofactor guanylyltransferase -
  DSM104626_RS02050 (DSM104626_00411) - 415963..417270 (+) 1308 WP_200408852.1 NFACT family protein -
  DSM104626_RS02055 (DSM104626_00412) - 417273..417611 (+) 339 WP_002825237.1 hypothetical protein -
  DSM104626_RS02060 (DSM104626_00413) - 417620..418348 (+) 729 WP_044600576.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35525.42 Da        Isoelectric Point: 9.5069

>NTDB_id=278540 DSM104626_RS02035 WP_200408850.1 413232..414200(-) (ceuB) [Campylobacter coli strain meC0281]
MLFKHLFSLNILLILLVVFGMISLFIGVIRINLDDIFSLSATQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQALIASIFALLGSFIFIQILRKIKLKDMIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=278540 DSM104626_RS02035 WP_200408850.1 413232..414200(-) (ceuB) [Campylobacter coli strain meC0281]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATGATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCGCTACCCAGCTTGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCCCCAACTACCGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTGCAGGAGCTTC
TTTTTTTACTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATATGATTTTTGTGCCTTTGATAGGCTTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.441

100

0.894

Multiple sequence alignment