Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   DSM104626_RS01740 Genome accession   NZ_CP027634
Coordinates   351287..352468 (+) Length   393 a.a.
NCBI ID   WP_038853148.1    Uniprot ID   -
Organism   Campylobacter coli strain meC0281     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 346287..357468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104626_RS10085 (DSM104626_00347) - 347257..349227 (+) 1971 WP_002795129.1 hypothetical protein -
  DSM104626_RS01735 (DSM104626_00348) - 349263..351290 (+) 2028 WP_052792961.1 capsular polysaccharide biosynthesis protein -
  DSM104626_RS01740 (DSM104626_00349) kpsS 351287..352468 (+) 1182 WP_038853148.1 capsule biosynthesis protein Regulator
  DSM104626_RS01745 (DSM104626_00350) - 352538..353659 (+) 1122 WP_004289218.1 DUF829 domain-containing protein -
  DSM104626_RS01750 (DSM104626_00351) - 353656..355026 (+) 1371 WP_002808694.1 cytochrome P450 -
  DSM104626_RS01755 (DSM104626_00352) - 355023..355445 (+) 423 WP_002783824.1 hypothetical protein -
  DSM104626_RS01760 (DSM104626_00353) acpS 355448..355795 (-) 348 WP_002779165.1 holo-ACP synthase -
  DSM104626_RS01765 (DSM104626_00354) fliL 355795..356331 (-) 537 WP_002779164.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 46455.14 Da        Isoelectric Point: 10.0046

>NTDB_id=278538 DSM104626_RS01740 WP_038853148.1 351287..352468(+) (kpsS) [Campylobacter coli strain meC0281]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYENFFKEKKT
DAIVMYNDCRLIHAKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWFFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAVLQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKKALGCITINS
TVGLSAILEGCPTKVCGNAFYNFEGLAYPKKLQFFWREAHAYKPNPSLVINFKNYLLNTNQFNGNFYKNSFLG

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=278538 DSM104626_RS01740 WP_038853148.1 351287..352468(+) (kpsS) [Campylobacter coli strain meC0281]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGCACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGCGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTCTATGAGAACTTTTTTAAAGAAAAAAAGACA
GATGCTATTGTGATGTATAATGATTGTCGTTTGATTCATGCAAAAGCTATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGCTTTAAATTT
ATGGCCTTTAGTGCTTTTTTGTATTGGTTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CCTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTACAGCCTTGAAAAAAAGTATTTTTTGGCTGTTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTGATAAATGAGCTAAGCCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCCACTCTTTTAAAAAAGGCTTTGGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTGGAGGGCTGTCCTACTAAGGTTTGTGGAAATGCATTTTACAATTTTGAAGGCCTAGC
TTATCCAAAAAAACTTCAATTTTTTTGGCGCGAAGCTCATGCTTATAAACCCAATCCTAGCTTGGTTATAAATTTTAAAA
ATTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCGTTTTTAGGTTGA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

88.01

99.746

0.878

Multiple sequence alignment