Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM379_RS16065 Genome accession   NZ_CP027618
Coordinates   3346174..3346800 (+) Length   208 a.a.
NCBI ID   WP_032677817.1    Uniprot ID   -
Organism   Enterobacter cloacae complex sp. FDA-CDC-AR_0132     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3341174..3351800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM379_RS16045 (AM379_16030) - 3341568..3343328 (-) 1761 WP_063925136.1 Lon protease family protein -
  AM379_RS16050 (AM379_16035) matP 3343515..3343967 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  AM379_RS16055 (AM379_16040) ompA 3344037..3345092 (-) 1056 WP_020884794.1 porin OmpA -
  AM379_RS16060 (AM379_16045) sulA 3345447..3345956 (-) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  AM379_RS16065 (AM379_16050) sxy/tfoX 3346174..3346800 (+) 627 WP_032677817.1 TfoX/Sxy family DNA transformation protein Regulator
  AM379_RS16070 (AM379_16055) yccS 3346757..3348919 (-) 2163 WP_068794470.1 YccS family putative transporter -
  AM379_RS16075 (AM379_16060) - 3348939..3349385 (-) 447 WP_025204535.1 YccF domain-containing protein -
  AM379_RS16080 (AM379_16065) helD 3349509..3351563 (+) 2055 WP_032677818.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23863.40 Da        Isoelectric Point: 9.4993

>NTDB_id=278529 AM379_RS16065 WP_032677817.1 3346174..3346800(+) (sxy/tfoX) [Enterobacter cloacae complex sp. FDA-CDC-AR_0132]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITNEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=278529 AM379_RS16065 WP_032677817.1 3346174..3346800(+) (sxy/tfoX) [Enterobacter cloacae complex sp. FDA-CDC-AR_0132]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGATGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTCTTAACCCTCATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTAATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTAAAGATGCGGGCGAAAAAT
AAAGCGCTCAGCATTAAAGTGCTGTTCGCGCTGGAAGGGGCCATCGCCGGACTTCATGAGGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.621

97.596

0.572

Multiple sequence alignment