Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SPYM_RS02085 Genome accession   NC_009332
Coordinates   407243..407968 (+) Length   241 a.a.
NCBI ID   WP_011888644.1    Uniprot ID   -
Organism   Streptococcus pyogenes str. Manfredo     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 402243..412968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM_RS02055 (SpyM50368) - 402422..403882 (+) 1461 WP_002983366.1 NCS2 family permease -
  SPYM_RS02060 (SpyM50369) tsaE 404036..404497 (+) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SPYM_RS02065 (SpyM50370) - 404472..404996 (+) 525 WP_011888642.1 GNAT family N-acetyltransferase -
  SPYM_RS02070 (SpyM50371) brpA 405005..406288 (+) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  SPYM_RS02075 (SpyM50372) - 406399..406755 (-) 357 WP_011888643.1 hypothetical protein -
  SPYM_RS02080 (SpyM50373) - 406752..407171 (-) 420 WP_002983376.1 HIT family protein -
  SPYM_RS02085 (SpyM50374) pptA 407243..407968 (+) 726 WP_011888644.1 ABC transporter ATP-binding protein Regulator
  SPYM_RS02090 (SpyM50375) - 407971..409005 (+) 1035 WP_002994331.1 ABC transporter permease -
  SPYM_RS02095 (SpyM50376) ccrZ 409069..409860 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  SPYM_RS02100 (SpyM50377) trmB 409860..410495 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SPYM_RS02110 (SpyM50378) rimP 410754..411290 (+) 537 WP_011888645.1 ribosome maturation factor RimP -
  SPYM_RS02115 (SpyM50379) nusA 411465..412622 (+) 1158 WP_002983485.1 transcription termination factor NusA -
  SPYM_RS02120 (SpyM50380) rnpM 412638..412934 (+) 297 WP_002983486.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26650.69 Da        Isoelectric Point: 4.5624

>NTDB_id=27851 SPYM_RS02085 WP_011888644.1 407243..407968(+) (pptA) [Streptococcus pyogenes str. Manfredo]
MLNIKNLTGGYHNIPVLNDVSFSVDNGELVGLIGLNGAGKSTTINEIIGFLKPYQGSISIDGLTLAENAVAYRQKIGFIP
ETPSLYEELTLSEHINTVAMAYDIDLEVAQKRAQPFLEMFRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEAEKAKGKSILMSTHVLDSAERMCDRFVILHHGQVRAQGTLADLQEAFGDRSASLNDIYLALTKE
D

Nucleotide


Download         Length: 726 bp        

>NTDB_id=27851 SPYM_RS02085 WP_011888644.1 407243..407968(+) (pptA) [Streptococcus pyogenes str. Manfredo]
ATGTTAAACATTAAAAATCTAACAGGAGGATATCACAATATCCCTGTTTTAAACGATGTCTCATTTTCTGTAGACAATGG
AGAGTTAGTCGGTTTGATCGGGCTAAATGGTGCTGGAAAGTCAACAACTATCAACGAAATTATTGGCTTTTTGAAGCCTT
ATCAAGGAAGTATTTCTATTGATGGTTTAACTCTAGCAGAAAATGCAGTTGCCTACCGTCAAAAAATAGGTTTTATCCCA
GAAACTCCTAGTCTCTATGAAGAATTGACCTTATCAGAGCATATCAACACCGTAGCTATGGCTTATGATATCGACTTAGA
AGTGGCACAAAAACGAGCACAACCTTTCTTGGAAATGTTTCGTTTAACTGACAAACTTGAATGGTTTCCTGTCAATTTTT
CTAAAGGGATGAAACAAAAAGTCATGATTATTTGTGCCTTTGTCATTGATCCAAGTCTATTTATTCTTGATGAACCATTC
TTAGGGTTAGACCCTTTAGCTATTTCAGACTTAATCCAAACGCTAGAAGCCGAAAAAGCAAAAGGAAAATCTATTTTGAT
GAGTACACATGTTTTGGACTCTGCTGAAAGAATGTGTGATCGTTTTGTGATTTTGCATCATGGACAAGTTCGTGCCCAAG
GAACTCTTGCTGACTTGCAAGAAGCTTTTGGTGACCGTTCAGCGAGCTTAAATGATATCTATCTTGCATTAACAAAAGAG
GATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.803

99.17

0.722
  pptA Streptococcus thermophilus LMD-9

71.967

99.17

0.714

Multiple sequence alignment