Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   AM480_RS03835 Genome accession   NZ_CP027611
Coordinates   780893..781777 (-) Length   294 a.a.
NCBI ID   WP_024437247.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AR_0101     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 775893..786777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM480_RS03820 (AM480_03820) miaB 777740..779191 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AM480_RS03825 (AM480_03825) - 779229..780317 (+) 1089 WP_000122983.1 PhoH family protein -
  AM480_RS03830 (AM480_03830) ybeY 780327..780803 (+) 477 WP_000703570.1 rRNA maturation RNase YbeY -
  AM480_RS03835 (AM480_03835) tonB2 780893..781777 (-) 885 WP_024437247.1 energy transducer TonB Machinery gene
  AM480_RS03840 (AM480_03840) - 782008..782679 (+) 672 WP_001193959.1 hypothetical protein -
  AM480_RS03845 (AM480_03845) - 782837..783550 (+) 714 WP_000201544.1 DUF3108 domain-containing protein -
  AM480_RS03850 (AM480_03850) - 783623..784198 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  AM480_RS03855 (AM480_03855) wrbA 784251..784844 (-) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  AM480_RS03860 (AM480_03860) - 785132..786379 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33664.57 Da        Isoelectric Point: 9.0935

>NTDB_id=278466 AM480_RS03835 WP_024437247.1 780893..781777(-) (tonB2) [Acinetobacter baumannii strain AR_0101]
MLKKRSLSIEPFYYWWQDRIFIVAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=278466 AM480_RS03835 WP_024437247.1 780893..781777(-) (tonB2) [Acinetobacter baumannii strain AR_0101]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAATCTTTATTGTCGCGATAATACT
CGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTCTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993

Multiple sequence alignment