Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C7A06_RS22015 Genome accession   NZ_CP027599
Coordinates   3910750..3911379 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 97-3250     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3899672..3922552 3910750..3911379 within 0


Gene organization within MGE regions


Location: 3899672..3922552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A06_RS21955 - 3899672..3900691 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  C7A06_RS21960 yccA 3901099..3901758 (+) 660 WP_000375138.1 FtsH protease modulator YccA -
  C7A06_RS21965 tusE 3901849..3902178 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  C7A06_RS21970 yccX 3902175..3902453 (-) 279 WP_000048244.1 acylphosphatase -
  C7A06_RS21975 rlmI 3902548..3903738 (+) 1191 WP_000116301.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  C7A06_RS21980 hspQ 3903796..3904113 (+) 318 WP_001295356.1 heat shock protein HspQ -
  C7A06_RS21985 yccU 3904158..3904571 (-) 414 WP_000665217.1 CoA-binding protein -
  C7A06_RS21990 yccT 3904744..3905406 (+) 663 WP_000847791.1 DUF2057 family protein -
  C7A06_RS21995 mgsA 3905502..3905960 (+) 459 WP_000424181.1 methylglyoxal synthase -
  C7A06_RS22000 helD 3905992..3908046 (-) 2055 WP_001297106.1 DNA helicase IV -
  C7A06_RS22005 yccF 3908169..3908615 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C7A06_RS22010 yccS 3908625..3910787 (+) 2163 WP_000875023.1 YccS family putative transporter -
  C7A06_RS22015 sxy/tfoX 3910750..3911379 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C7A06_RS22020 sulA 3911598..3912107 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C7A06_RS22030 ompA 3912464..3913504 (+) 1041 WP_000750416.1 porin OmpA -
  C7A06_RS22035 matP 3913579..3914031 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C7A06_RS22040 ycbZ 3914217..3915977 (+) 1761 WP_000156528.1 Lon protease family protein -
  C7A06_RS22045 fabA 3916046..3916564 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  C7A06_RS22050 rmf 3916634..3916801 (-) 168 WP_000828648.1 ribosome modulation factor -
  C7A06_RS22055 pqiC 3917057..3917620 (-) 564 WP_000759122.1 membrane integrity-associated transporter subunit PqiC -
  C7A06_RS22060 pqiB 3917617..3919257 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  C7A06_RS22065 pqiA 3919262..3920515 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  C7A06_RS22070 uup 3920645..3922552 (-) 1908 WP_000053122.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=278406 C7A06_RS22015 WP_000839153.1 3910750..3911379(-) (sxy/tfoX) [Escherichia coli strain 97-3250]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=278406 C7A06_RS22015 WP_000839153.1 3910750..3911379(-) (sxy/tfoX) [Escherichia coli strain 97-3250]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment