Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | C7A05_RS18090 | Genome accession | NZ_CP027591 |
| Coordinates | 3080726..3081355 (-) | Length | 209 a.a. |
| NCBI ID | WP_032186268.1 | Uniprot ID | - |
| Organism | Escherichia coli strain 2014C-3011 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3055797..3092529 | 3080726..3081355 | within | 0 |
Gene organization within MGE regions
Location: 3055797..3092529
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7A05_RS17915 | - | 3057403..3058176 (-) | 774 | WP_062881813.1 | alpha/beta hydrolase | - |
| C7A05_RS17920 | hokD | 3058781..3058936 (+) | 156 | WP_000813263.1 | type I toxin-antitoxin system toxin HokD | - |
| C7A05_RS17925 | - | 3059104..3059382 (+) | 279 | WP_074433979.1 | hypothetical protein | - |
| C7A05_RS17930 | - | 3059384..3060433 (+) | 1050 | WP_001265133.1 | DUF968 domain-containing protein | - |
| C7A05_RS17935 | - | 3060446..3060817 (+) | 372 | WP_001217436.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C7A05_RS17940 | - | 3060807..3061178 (+) | 372 | WP_000090265.1 | antiterminator Q family protein | - |
| C7A05_RS17945 | - | 3061330..3062148 (+) | 819 | WP_000265267.1 | CPBP family intramembrane glutamic endopeptidase | - |
| C7A05_RS17950 | - | 3062435..3062632 (+) | 198 | WP_000917737.1 | hypothetical protein | - |
| C7A05_RS29795 | - | 3062767..3063192 (+) | 426 | WP_176465538.1 | hypothetical protein | - |
| C7A05_RS17960 | - | 3063179..3063274 (-) | 96 | Protein_3165 | Rha family transcriptional regulator | - |
| C7A05_RS17965 | - | 3063258..3063530 (-) | 273 | WP_000887453.1 | YdaS family helix-turn-helix protein | - |
| C7A05_RS17970 | - | 3063639..3064040 (+) | 402 | WP_000986592.1 | helix-turn-helix domain-containing protein | - |
| C7A05_RS17975 | - | 3064068..3064259 (+) | 192 | WP_000536233.1 | hypothetical protein | - |
| C7A05_RS17980 | - | 3064259..3064546 (+) | 288 | WP_001303876.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C7A05_RS17985 | - | 3064823..3064978 (+) | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C7A05_RS30600 | ydfB | 3064980..3065108 (+) | 129 | WP_000344963.1 | protein YdfB | - |
| C7A05_RS17995 | - | 3065120..3065509 (+) | 390 | WP_032205089.1 | hypothetical protein | - |
| C7A05_RS18000 | - | 3065696..3065881 (-) | 186 | WP_032205087.1 | hypothetical protein | - |
| C7A05_RS18010 | dicB | 3066455..3066643 (+) | 189 | WP_000413705.1 | cell division inhibition protein DicB | - |
| C7A05_RS18015 | - | 3066640..3066831 (+) | 192 | WP_001098307.1 | DUF1482 family protein | - |
| C7A05_RS18020 | - | 3066925..3069360 (+) | 2436 | WP_106879261.1 | exonuclease | - |
| C7A05_RS18025 | - | 3069428..3069670 (+) | 243 | WP_000273151.1 | DUF4224 domain-containing protein | - |
| C7A05_RS18030 | - | 3069648..3070667 (+) | 1020 | WP_001299351.1 | tyrosine-type recombinase/integrase | - |
| C7A05_RS18035 | yccA | 3071075..3071734 (+) | 660 | WP_062882278.1 | FtsH protease modulator YccA | - |
| C7A05_RS18040 | tusE | 3071825..3072154 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| C7A05_RS18045 | yccX | 3072151..3072429 (-) | 279 | WP_000048252.1 | acylphosphatase | - |
| C7A05_RS18050 | rlmI | 3072524..3073714 (+) | 1191 | WP_062882280.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| C7A05_RS18055 | hspQ | 3073772..3074089 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| C7A05_RS18060 | yccU | 3074134..3074547 (-) | 414 | WP_001343235.1 | CoA-binding protein | - |
| C7A05_RS18065 | yccT | 3074720..3075382 (+) | 663 | WP_060616790.1 | DUF2057 family protein | - |
| C7A05_RS18070 | mgsA | 3075478..3075936 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| C7A05_RS18075 | helD | 3075968..3078022 (-) | 2055 | WP_000420537.1 | DNA helicase IV | - |
| C7A05_RS18080 | yccF | 3078145..3078591 (+) | 447 | WP_062882281.1 | YccF domain-containing protein | - |
| C7A05_RS18085 | yccS | 3078601..3080763 (+) | 2163 | WP_074434046.1 | YccS family putative transporter | - |
| C7A05_RS18090 | sxy/tfoX | 3080726..3081355 (-) | 630 | WP_032186268.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| C7A05_RS18095 | sulA | 3081574..3082083 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| C7A05_RS18105 | ompA | 3082440..3083480 (+) | 1041 | WP_062882317.1 | porin OmpA | - |
| C7A05_RS18110 | matP | 3083556..3084008 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| C7A05_RS18115 | ycbZ | 3084194..3085954 (+) | 1761 | WP_062882282.1 | Lon protease family protein | - |
| C7A05_RS18120 | fabA | 3086023..3086541 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| C7A05_RS18125 | rmf | 3086611..3086778 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| C7A05_RS18130 | pqiC | 3087034..3087597 (-) | 564 | WP_000759129.1 | membrane integrity-associated transporter subunit PqiC | - |
| C7A05_RS18135 | pqiB | 3087594..3089234 (-) | 1641 | WP_000445561.1 | intermembrane transport protein PqiB | - |
| C7A05_RS18140 | pqiA | 3089239..3090492 (-) | 1254 | WP_062882283.1 | membrane integrity-associated transporter subunit PqiA | - |
| C7A05_RS18145 | uup | 3090622..3092529 (-) | 1908 | WP_062882284.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24177.04 Da Isoelectric Point: 8.9883
>NTDB_id=278383 C7A05_RS18090 WP_032186268.1 3080726..3081355(-) (sxy/tfoX) [Escherichia coli strain 2014C-3011]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLWQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLWQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=278383 C7A05_RS18090 WP_032186268.1 3080726..3081355(-) (sxy/tfoX) [Escherichia coli strain 2014C-3011]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGTGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGTGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
99.522 |
100 |
0.995 |