Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6998_RS04370 Genome accession   NZ_CP027587
Coordinates   825981..826610 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2013C-4974     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 820981..831610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6998_RS04345 ycbZ 821382..823142 (-) 1761 WP_000156532.1 Lon protease family protein -
  C6998_RS04350 matP 823328..823780 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6998_RS04355 ompA 823856..824896 (-) 1041 WP_001404956.1 porin OmpA -
  C6998_RS04365 sulA 825253..825762 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6998_RS04370 sxy/tfoX 825981..826610 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6998_RS04375 yccS 826573..828735 (-) 2163 WP_000875023.1 YccS family putative transporter -
  C6998_RS04380 yccF 828745..829191 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C6998_RS04385 helD 829314..831368 (+) 2055 WP_001364529.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=278350 C6998_RS04370 WP_000839153.1 825981..826610(+) (sxy/tfoX) [Escherichia coli strain 2013C-4974]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=278350 C6998_RS04370 WP_000839153.1 825981..826610(+) (sxy/tfoX) [Escherichia coli strain 2013C-4974]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGAGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment