Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C7A04_RS22420 Genome accession   NZ_CP027586
Coordinates   4231506..4232135 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2012EL-2448     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4226506..4237135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A04_RS22395 ycbZ 4226907..4228667 (-) 1761 WP_000156526.1 Lon protease family protein -
  C7A04_RS22400 matP 4228853..4229305 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C7A04_RS22405 ompA 4229381..4230421 (-) 1041 WP_000750416.1 porin OmpA -
  C7A04_RS22415 sulA 4230778..4231287 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C7A04_RS22420 sxy/tfoX 4231506..4232135 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C7A04_RS22425 yccS 4232098..4234260 (-) 2163 WP_000875020.1 YccS family putative transporter -
  C7A04_RS22430 yccF 4234270..4234716 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C7A04_RS22435 helD 4234839..4236893 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=278346 C7A04_RS22420 WP_000839153.1 4231506..4232135(+) (sxy/tfoX) [Escherichia coli strain 2012EL-2448]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=278346 C7A04_RS22420 WP_000839153.1 4231506..4232135(+) (sxy/tfoX) [Escherichia coli strain 2012EL-2448]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment