Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C7A02_RS03690 Genome accession   NZ_CP027584
Coordinates   735451..736080 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 00-3076     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 730451..741080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A02_RS03665 ycbZ 730841..732601 (-) 1761 WP_000156526.1 Lon protease family protein -
  C7A02_RS03670 matP 732787..733239 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  C7A02_RS03675 ompA 733314..734366 (-) 1053 WP_000750419.1 porin OmpA -
  C7A02_RS03685 sulA 734723..735232 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C7A02_RS03690 sxy/tfoX 735451..736080 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C7A02_RS03695 yccS 736043..738205 (-) 2163 WP_000875044.1 YccS family putative transporter -
  C7A02_RS03700 yccF 738215..738661 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C7A02_RS03705 helD 738784..740838 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=278306 C7A02_RS03690 WP_000839153.1 735451..736080(+) (sxy/tfoX) [Escherichia coli strain 00-3076]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=278306 C7A02_RS03690 WP_000839153.1 735451..736080(+) (sxy/tfoX) [Escherichia coli strain 00-3076]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment