Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6996_RS08390 Genome accession   NZ_CP027579
Coordinates   1609150..1609779 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2013C-4282     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1604150..1614779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6996_RS08375 helD 1604392..1606446 (-) 2055 WP_001353312.1 DNA helicase IV -
  C6996_RS08380 yccF 1606569..1607015 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6996_RS08385 yccS 1607025..1609187 (+) 2163 WP_000875038.1 YccS family putative transporter -
  C6996_RS08390 sxy/tfoX 1609150..1609779 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6996_RS08395 sulA 1609998..1610507 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6996_RS08405 ompA 1610864..1611916 (+) 1053 WP_000750415.1 porin OmpA -
  C6996_RS08410 matP 1611993..1612445 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6996_RS08415 ycbZ 1612631..1614391 (+) 1761 WP_000156537.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=278263 C6996_RS08390 WP_000839153.1 1609150..1609779(-) (sxy/tfoX) [Escherichia coli strain 2013C-4282]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=278263 C6996_RS08390 WP_000839153.1 1609150..1609779(-) (sxy/tfoX) [Escherichia coli strain 2013C-4282]
ATGAAAAGTCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATACTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment