Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECDH10B_RS01155 Genome accession   NC_010473
Coordinates   237584..238060 (-) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli str. K-12 substr. DH10B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232584..243060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECDH10B_RS01130 (ECDH10B_0224) proB 233716..234819 (+) 1104 WP_001285288.1 glutamate 5-kinase -
  ECDH10B_RS01135 (ECDH10B_0225) proA 234831..236084 (+) 1254 WP_000893278.1 glutamate-5-semialdehyde dehydrogenase -
  ECDH10B_RS01145 (ECDH10B_0227) ykfI 236656..236997 (-) 342 WP_000854672.1 type IV toxin-antitoxin system toxin YkfI -
  ECDH10B_RS01150 (ECDH10B_0228) yafW 237018..237335 (-) 318 WP_000070395.1 type IV toxin-antitoxin system antitoxin YafW -
  ECDH10B_RS23500 (ECDH10B_0229) ykfH 237354..237575 (-) 222 WP_000691994.1 DUF987 domain-containing protein -
  ECDH10B_RS01155 (ECDH10B_0230) radC 237584..238060 (-) 477 WP_000811693.1 RadC family protein Machinery gene
  ECDH10B_RS01160 (ECDH10B_0231) yafX 238076..238534 (-) 459 WP_000211838.1 antirestriction protein -
  ECDH10B_RS01165 (ECDH10B_0232) ykfF 238632..238871 (-) 240 WP_000194654.1 DUF905 family protein -
  ECDH10B_RS01170 (ECDH10B_0233) ykfB 238948..239415 (-) 468 WP_001547765.1 protein YkfB -
  ECDH10B_RS25845 (ECDH10B_0234) yafY 239438..239881 (-) 444 WP_000824223.1 YfjS/YafY family lipoprotein -
  ECDH10B_RS25850 (ECDH10B_0235) ypjK 239881..240108 (-) 228 WP_001548158.1 protein YpjK -
  ECDH10B_RS25855 (ECDH10B_0236) - 240104..240295 (-) 192 Protein_228 DeoR family transcriptional regulator -
  ECDH10B_RS01185 (ECDH10B_0237) yafZ 240512..241333 (-) 822 WP_000197389.1 DUF932 domain-containing protein -
  ECDH10B_RS01190 (ECDH10B_0238) ykfA 241425..242288 (-) 864 WP_001065553.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=27826 ECDH10B_RS01155 WP_000811693.1 237584..238060(-) (radC) [Escherichia coli str. K-12 substr. DH10B]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=27826 ECDH10B_RS01155 WP_000811693.1 237584..238060(-) (radC) [Escherichia coli str. K-12 substr. DH10B]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38

Multiple sequence alignment