Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C6P08_RS04220 Genome accession   NZ_CP027565
Coordinates   819916..821724 (+) Length   602 a.a.
NCBI ID   WP_135797550.1    Uniprot ID   -
Organism   Weissella confusa strain VTT E-90392     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 814916..826724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P08_RS04195 (C6P08_04205) - 815091..815408 (+) 318 WP_003610163.1 PTS sugar transporter subunit IIB -
  C6P08_RS04200 (C6P08_04210) - 815492..815818 (+) 327 WP_003610161.1 PTS lactose/cellobiose transporter subunit IIA -
  C6P08_RS04205 (C6P08_04215) - 815818..817269 (+) 1452 WP_135797547.1 6-phospho-beta-glucosidase -
  C6P08_RS04210 (C6P08_04220) - 817344..818705 (+) 1362 WP_135797548.1 PTS sugar transporter subunit IIC -
  C6P08_RS04215 (C6P08_04225) - 818828..819838 (+) 1011 WP_135797549.1 competence protein CoiA family protein -
  C6P08_RS04220 (C6P08_04230) pepF 819916..821724 (+) 1809 WP_135797550.1 oligoendopeptidase F Regulator
  C6P08_RS04225 (C6P08_04235) - 821784..822503 (-) 720 WP_135797551.1 MIP/aquaporin family protein -
  C6P08_RS04230 (C6P08_04240) - 822814..823203 (+) 390 WP_135797552.1 DUF948 domain-containing protein -
  C6P08_RS04235 (C6P08_04245) - 823232..823861 (+) 630 WP_056972931.1 hypothetical protein -
  C6P08_RS04240 (C6P08_04250) ccpA 823914..824918 (-) 1005 WP_135797553.1 catabolite control protein A -
  C6P08_RS04245 (C6P08_04255) - 825163..826263 (+) 1101 WP_135797554.1 Xaa-Pro peptidase family protein -
  C6P08_RS04250 (C6P08_04260) - 826311..826706 (-) 396 WP_056972929.1 hypothetical protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68034.83 Da        Isoelectric Point: 4.2154

>NTDB_id=278178 C6P08_RS04220 WP_135797550.1 819916..821724(+) (pepF) [Weissella confusa strain VTT E-90392]
MAKELPLREELPESMTWDLSTIFASDEAWEDAFADLEDRLESAEFFAANVTNSATDLYNALQYGLGLMQDLEKLYVYASM
KSDQDTANTFYQGLNNMAESLAARVSAAIAFFDPAVLSLSEEELSEFFVAEPKLQAYKHYFDSILTQQGHVLPTEQESLL
AAAGDVFGASQRTFGVLDNADISFEAVENEDGEMETLSNGVYSRLLESTKPEIRKNAFQTFYKSYMALENTFASLIGNHV
KGQNFMAAAHHYDNAREAALAGNHVPEVVYDTLVAEVNKALPLLHRYVGLRKKLLGLDELHSYDLYTPILGEPDYDIDYE
SAKAEALQALAPLGDDYLDIVNKAFDSRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLSNLSTLVHEMGHSVHSYY
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTIDDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAEGTPL
TADVLDEAYGEMNRRYYGPELTFDEEIAHEWERIPHFYYNFYVFQYATGFAAATAMADKILTEGEPAVAAYKEYLQAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEERLNEFEALVNELA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=278178 C6P08_RS04220 WP_135797550.1 819916..821724(+) (pepF) [Weissella confusa strain VTT E-90392]
ATGGCAAAAGAATTACCATTGCGCGAAGAGTTGCCTGAGTCAATGACCTGGGACCTATCAACAATCTTTGCCTCTGACGA
AGCGTGGGAAGATGCCTTCGCAGATTTGGAAGACCGTCTTGAATCAGCGGAGTTCTTTGCAGCGAACGTGACGAATTCTG
CAACGGACTTGTACAATGCGTTGCAATACGGCTTGGGCTTGATGCAAGATTTGGAAAAGTTGTACGTATATGCCTCAATG
AAGTCTGACCAAGACACGGCTAACACGTTCTATCAAGGTTTGAACAACATGGCTGAGTCGTTGGCTGCCCGCGTGTCAGC
TGCGATTGCCTTTTTTGACCCAGCCGTTTTGAGCTTGTCAGAAGAGGAATTGTCAGAGTTCTTTGTAGCTGAACCTAAGT
TACAAGCCTACAAGCACTACTTTGACAGCATTTTGACGCAACAAGGTCACGTTTTGCCAACTGAACAAGAGTCACTTTTG
GCAGCTGCAGGTGATGTCTTTGGTGCATCGCAACGTACCTTCGGTGTGTTGGATAACGCAGATATTTCATTCGAAGCCGT
TGAAAATGAAGACGGTGAAATGGAAACATTGTCTAATGGTGTTTACTCACGTTTGTTGGAATCAACGAAGCCCGAAATCC
GTAAGAATGCGTTCCAAACATTCTACAAGTCATACATGGCTTTGGAGAATACATTTGCTTCATTGATTGGTAACCACGTA
AAGGGTCAAAACTTCATGGCAGCTGCACACCATTATGACAATGCGCGTGAAGCAGCGTTGGCTGGTAACCACGTGCCTGA
AGTGGTATATGATACGTTGGTTGCTGAGGTTAATAAGGCATTGCCATTGCTCCACCGCTATGTTGGCTTGCGTAAGAAGT
TGTTGGGCTTGGACGAGCTACACTCATATGATCTTTACACACCAATTTTGGGTGAGCCAGATTATGATATTGACTATGAG
TCAGCTAAGGCTGAGGCGTTGCAAGCCTTGGCACCATTGGGGGATGATTACCTTGATATTGTGAACAAGGCCTTTGATAG
TCGCTGGATTGATGTGATTGAAAACAAGGGTAAGCGTTCTGGTGCTTATTCAGGTGGGTCATACGACACAAACCCATTCA
TTTTGTTGAACTGGGTCGACAATTTGAGTAACTTGAGCACGCTTGTTCACGAAATGGGCCACTCAGTGCACTCATACTAC
ACGCGTCAAAACCAACCATATCACTATGGTGACTACCCAATTTTCTTGGCTGAAATTGCGTCAACGACGAATGAGAATTT
GTTGACGGATTACTTGTTGAAGACGATTGATGACAAGAAGCTACGTGCATACATTTTGAACCAATACTTGGATGGCGTGA
AGGGAACAGTCTTCCGTCAAACCCAATTTGCTGAATTTGAGCAATGGATGCACGTAACCGATGCCGAAGGAACACCTTTG
ACAGCTGATGTTTTGGACGAAGCATATGGTGAAATGAACCGTCGATACTATGGTCCAGAATTGACGTTTGATGAAGAGAT
TGCCCACGAGTGGGAACGTATTCCACACTTCTACTACAACTTCTACGTCTTCCAATATGCAACTGGCTTTGCAGCTGCAA
CGGCCATGGCAGACAAGATTTTGACTGAAGGTGAGCCTGCAGTCGCGGCTTACAAGGAATACTTGCAAGCTGGTTCATCA
GCATTCCCAATTGATGTGATGAAGAAGGCTGGTTTGGACATGACCAAGCCAGATTACCTCCGTGATACATTCAAGGTCTT
CGAAGAACGCTTGAACGAGTTCGAAGCGCTAGTTAATGAATTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-584)

Oligopeptidase F (Peptidase_M3_N)

(117-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.469

98.173

0.525

Multiple sequence alignment