Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C6P08_RS02060 Genome accession   NZ_CP027565
Coordinates   409706..411079 (+) Length   457 a.a.
NCBI ID   WP_039968258.1    Uniprot ID   A0A329G1S7
Organism   Weissella confusa strain VTT E-90392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 404706..416079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P08_RS02030 (C6P08_02025) budA 404890..405606 (+) 717 WP_135797226.1 acetolactate decarboxylase -
  C6P08_RS02035 (C6P08_02030) - 405705..406712 (+) 1008 WP_135797227.1 zinc-binding alcohol dehydrogenase family protein -
  C6P08_RS02040 (C6P08_02035) - 407088..408158 (+) 1071 WP_135797228.1 LysM peptidoglycan-binding domain-containing protein -
  C6P08_RS02045 (C6P08_02040) - 408213..408755 (+) 543 WP_135797229.1 NlpC/P60 family protein -
  C6P08_RS02050 (C6P08_02045) - 408771..409049 (+) 279 WP_135797230.1 GNAT family N-acetyltransferase -
  C6P08_RS02055 (C6P08_02050) - 409150..409692 (+) 543 WP_135797231.1 dUTP diphosphatase -
  C6P08_RS02060 (C6P08_02055) radA 409706..411079 (+) 1374 WP_039968258.1 DNA repair protein RadA Machinery gene
  C6P08_RS02065 (C6P08_02060) - 411091..412194 (+) 1104 WP_135797232.1 PIN/TRAM domain-containing protein -
  C6P08_RS02070 (C6P08_02065) gltX 412274..413770 (+) 1497 WP_135797233.1 glutamate--tRNA ligase -
  C6P08_RS02075 (C6P08_02070) - 413922..415190 (-) 1269 WP_135797101.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49364.54 Da        Isoelectric Point: 5.3975

>NTDB_id=278175 C6P08_RS02060 WP_039968258.1 409706..411079(+) (radA) [Weissella confusa strain VTT E-90392]
MAKTKTQFVCSNCGYVSQRYMGRCANCGAWGTFVEEVVQPEKADRKSRVNLAGQIARVERLGEVSIEETPRVDTSIDEFN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSSQLANHGGTILYVAGEESASQIKLRAERLGVKGDADFFLYPETDMTQIR
KAIDETKPDYVIIDSIQTMQQPDVSSAVGSVAQIRETTAELLQIAKTNGITIFIVGHVTKDGAIAGPKILEHMVDTVLYF
EGDNQRSFRLLRAVKNRFGSTNELGVFEMNESGLAEVTNPSGLFLEERLDDASGSAVVIAMEGSRPILVEVQALVTPTVF
GNAQRTASGIDRNRISLLMAVLEKRANLLLQNQDAYVRAAGGVKLDEPAIDLAIAIAIASSYRDKGTRPTDAFVGEIGLT
GEIRRVPNVVDRILEAKKLGFKRVFVPKHAVDTMKEISGIQVIGVATLTDALRLALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=278175 C6P08_RS02060 WP_039968258.1 409706..411079(+) (radA) [Weissella confusa strain VTT E-90392]
ATGGCTAAAACGAAAACACAATTTGTATGTTCGAATTGTGGATATGTATCACAACGCTATATGGGACGATGCGCCAACTG
TGGGGCCTGGGGCACGTTTGTTGAAGAAGTTGTACAACCTGAAAAGGCAGACCGTAAGTCACGTGTTAACTTGGCTGGTC
AAATCGCTCGCGTTGAACGTTTGGGCGAGGTCAGCATCGAAGAAACACCACGTGTCGACACATCGATTGATGAATTCAAC
CGTGTCTTAGGTGGTGGTGTCGTACCTGGTTCAATGGTGCTAATCGGTGGTGATCCTGGAATTGGTAAGTCAACATTGCT
TCTACAAGTTTCAAGTCAATTGGCAAACCATGGTGGCACAATTTTGTACGTCGCTGGTGAAGAAAGTGCGTCACAAATCA
AGTTGCGAGCTGAACGCTTGGGCGTGAAGGGGGATGCTGATTTCTTCCTTTATCCTGAGACGGATATGACGCAGATTCGC
AAAGCGATTGATGAGACGAAGCCAGATTACGTCATAATTGATTCAATTCAAACGATGCAACAACCGGATGTGTCTTCAGC
GGTTGGATCAGTTGCCCAAATTCGTGAAACGACAGCGGAATTGCTACAAATTGCCAAGACTAATGGGATTACTATCTTTA
TTGTTGGTCACGTGACAAAGGACGGGGCAATTGCCGGTCCAAAGATTTTGGAACACATGGTTGATACCGTCTTGTACTTC
GAGGGGGATAACCAACGCAGTTTCCGCTTGTTGCGTGCCGTCAAGAATCGTTTCGGTTCAACGAATGAATTGGGTGTCTT
TGAAATGAACGAGAGTGGTTTGGCCGAAGTGACCAACCCCTCTGGTCTTTTCTTGGAAGAACGTTTAGATGACGCTAGTG
GTTCAGCGGTCGTGATTGCAATGGAAGGTTCACGTCCAATTTTGGTTGAAGTCCAAGCGTTGGTGACGCCGACTGTCTTT
GGTAATGCACAACGTACCGCGTCAGGTATCGACCGCAACCGAATTTCATTGTTGATGGCGGTCTTGGAAAAGCGTGCCAA
CCTGCTGTTACAGAATCAGGATGCGTACGTTCGAGCAGCTGGAGGCGTAAAATTAGATGAACCAGCTATTGATTTGGCGA
TTGCCATTGCGATTGCCTCAAGTTATCGTGACAAGGGAACACGTCCGACGGATGCCTTTGTGGGTGAAATTGGATTGACT
GGTGAAATTCGTCGCGTGCCAAATGTTGTTGACCGTATTCTTGAAGCTAAGAAATTAGGCTTCAAACGTGTATTTGTCCC
AAAACATGCAGTTGATACGATGAAAGAGATTTCTGGTATTCAAGTTATCGGTGTCGCAACGTTAACGGATGCGCTACGTT
TGGCACTGGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A329G1S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

63.797

99.125

0.632
  radA Streptococcus mitis NCTC 12261

63.797

99.125

0.632
  radA Streptococcus pneumoniae Rx1

63.797

99.125

0.632
  radA Streptococcus pneumoniae D39

63.797

99.125

0.632
  radA Streptococcus pneumoniae R6

63.797

99.125

0.632
  radA Streptococcus pneumoniae TIGR4

63.797

99.125

0.632
  radA Bacillus subtilis subsp. subtilis str. 168

59.956

100

0.6

Multiple sequence alignment