Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C6P13_RS03700 Genome accession   NZ_CP027563
Coordinates   773978..775786 (+) Length   602 a.a.
NCBI ID   WP_003610154.1    Uniprot ID   A0A4Z0RUY2
Organism   Weissella confusa strain VTT E-133279     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 768978..780786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P13_RS03675 (C6P13_03670) - 769155..769472 (+) 318 WP_003610163.1 PTS sugar transporter subunit IIB -
  C6P13_RS03680 (C6P13_03675) - 769556..769882 (+) 327 WP_003610161.1 PTS lactose/cellobiose transporter subunit IIA -
  C6P13_RS03685 (C6P13_03680) - 769882..771333 (+) 1452 WP_135387847.1 6-phospho-beta-glucosidase -
  C6P13_RS03690 (C6P13_03685) - 771408..772769 (+) 1362 WP_003610156.1 PTS sugar transporter subunit IIC -
  C6P13_RS03695 (C6P13_03690) - 772887..773897 (+) 1011 WP_135387849.1 competence protein CoiA -
  C6P13_RS03700 (C6P13_03695) pepF 773978..775786 (+) 1809 WP_003610154.1 oligoendopeptidase F Regulator
  C6P13_RS03705 (C6P13_03700) - 775853..776572 (-) 720 WP_003610153.1 MIP/aquaporin family protein -
  C6P13_RS03710 (C6P13_03705) - 776883..777272 (+) 390 WP_003610152.1 DUF948 domain-containing protein -
  C6P13_RS03715 (C6P13_03710) - 777301..777930 (+) 630 WP_003610149.1 hypothetical protein -
  C6P13_RS03720 (C6P13_03715) ccpA 777983..778987 (-) 1005 WP_003610147.1 catabolite control protein A -
  C6P13_RS03725 (C6P13_03720) - 779232..780332 (+) 1101 WP_135387851.1 M24 family metallopeptidase -
  C6P13_RS03730 (C6P13_03725) - 780380..780775 (-) 396 WP_056972929.1 hypothetical protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68009.65 Da        Isoelectric Point: 4.1783

>NTDB_id=278155 C6P13_RS03700 WP_003610154.1 773978..775786(+) (pepF) [Weissella confusa strain VTT E-133279]
MAKELPLREELPESMTWDLSTIFASDEAWEDAFADLEDRLESAEFFAASVTNSATDLYNALQYGLGLMQDLEKLYVYASM
KSDQDTANTYYQGLNNMAESLAARVSAAIAFFDPAVLSLSEEELSEFFAAEPKLQDYKHYFDSILTQQGHVLPTEQESLL
AAAGDVFGASQRTFGVLDNADISFEAVENENGEMETLSNGVYSRLLESTNPEIRKNAFQTFYKSYMALENTFASLIGNHV
KGQNFMAAAHHYDNAREAALAGNHVPEVVYDTLVAEVNKALPLLHRYVGLRKKLLGLDELHSYDLYTPILGEPDYDIDYE
SAKAEALQALAPLGDDYLDIVNKAFDSRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYY
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVDDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAEGTPL
TADVLDEAYGEMNRRYYGPELTFDEEIAHEWERIPHFYYNFYVFQYATGFAAATAMADKILTEGEPAVAAYKEYLQAGSS
AFPIDVMKKAGLDMTKPDYLQDTFKVFEERLNEFEALVNELA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=278155 C6P13_RS03700 WP_003610154.1 773978..775786(+) (pepF) [Weissella confusa strain VTT E-133279]
ATGGCAAAAGAATTACCATTGCGCGAAGAGTTGCCTGAGTCAATGACTTGGGATCTATCAACCATCTTTGCCTCTGACGA
AGCGTGGGAAGATGCCTTCGCGGATTTGGAAGACCGTCTTGAATCAGCTGAGTTCTTTGCGGCAAGTGTGACGAATTCTG
CAACGGATTTGTACAACGCTTTGCAATACGGCCTAGGCTTGATGCAAGATTTGGAAAAGTTGTATGTATATGCCTCAATG
AAGTCTGATCAAGACACGGCTAACACTTACTACCAAGGTTTGAACAACATGGCCGAGTCTTTGGCTGCTCGTGTGTCAGC
TGCGATTGCCTTCTTTGACCCAGCCGTTTTGAGCTTGTCAGAAGAAGAGTTGTCAGAATTCTTTGCAGCTGAGCCTAAGC
TACAAGACTACAAGCACTACTTTGATAGCATTTTGACGCAACAAGGTCACGTCTTGCCAACTGAGCAAGAGTCACTTTTG
GCAGCCGCGGGTGATGTCTTTGGGGCATCACAACGTACATTTGGTGTGTTGGACAACGCTGATATTTCATTTGAAGCCGT
TGAAAATGAAAACGGTGAAATGGAAACGTTGTCTAACGGTGTTTACTCACGTTTGTTGGAGTCAACGAATCCTGAAATTC
GCAAGAATGCGTTCCAAACGTTCTACAAGTCATACATGGCTTTGGAGAACACGTTTGCCTCATTGATTGGTAACCATGTT
AAGGGACAAAACTTCATGGCGGCTGCGCACCACTACGACAATGCGCGTGAAGCTGCGTTGGCTGGTAACCACGTGCCTGA
AGTTGTTTACGATACGTTGGTTGCGGAAGTGAACAAGGCATTGCCATTGCTCCACCGTTATGTTGGTTTGCGTAAGAAGT
TGTTAGGCTTGGATGAGTTGCACTCATACGATCTTTACACGCCAATTTTGGGTGAACCAGATTATGATATCGATTATGAA
TCAGCCAAGGCTGAAGCATTGCAGGCGTTGGCACCCTTGGGGGATGATTATCTTGATATCGTGAACAAGGCCTTTGATAG
TCGTTGGATTGATGTCATTGAAAACAAGGGTAAGCGTTCAGGTGCTTATTCAGGTGGATCATATGACACAAACCCATTCA
TTTTGTTGAACTGGGTGGATAACTTGAATAACTTGAGCACGCTGGTTCACGAAATGGGTCACTCAGTGCACTCATATTAC
ACGCGTCAAAACCAACCATATCACTATGGTGACTACCCAATTTTCTTGGCTGAGATTGCCTCAACGACGAACGAGAACTT
GTTGACGGATTACTTGTTGAAGACGGTTGATGACAAGAAGCTCCGTGCTTATATCTTGAACCAATACTTGGATGGCGTTA
AGGGCACGGTCTTCCGTCAAACGCAATTTGCTGAATTTGAGCAATGGATGCACGTAACGGATGCTGAGGGTACGCCTTTG
ACGGCTGACGTTTTGGATGAAGCGTATGGTGAGATGAACCGTCGTTACTATGGTCCAGAATTGACGTTTGATGAAGAAAT
CGCGCACGAATGGGAGCGTATTCCACACTTCTACTACAACTTCTACGTCTTCCAATATGCAACAGGCTTTGCAGCTGCAA
CCGCAATGGCAGACAAGATTTTGACTGAAGGTGAGCCGGCCGTGGCAGCTTACAAGGAATACTTGCAAGCTGGTTCATCA
GCATTCCCAATTGATGTGATGAAGAAGGCTGGTTTGGATATGACCAAGCCGGATTACCTACAAGACACATTCAAGGTCTT
CGAGGAACGTTTGAACGAGTTCGAAGCACTTGTTAACGAATTGGCCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-184)

Peptidase family M3 (Peptidase_M3)

(205-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z0RUY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.638

98.173

0.527

Multiple sequence alignment