Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C6P13_RS02070 Genome accession   NZ_CP027563
Coordinates   408001..409374 (+) Length   457 a.a.
NCBI ID   WP_039968258.1    Uniprot ID   A0A329G1S7
Organism   Weissella confusa strain VTT E-133279     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 403001..414374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P13_RS02040 (C6P13_02040) budA 403205..403921 (+) 717 WP_003608658.1 acetolactate decarboxylase -
  C6P13_RS02045 (C6P13_02045) - 404021..405025 (+) 1005 WP_135387715.1 zinc-binding alcohol dehydrogenase family protein -
  C6P13_RS02050 (C6P13_02050) - 405400..406455 (+) 1056 WP_003608654.1 LysM peptidoglycan-binding domain-containing protein -
  C6P13_RS02055 (C6P13_02055) - 406509..407051 (+) 543 WP_003608652.1 NlpC/P60 family protein -
  C6P13_RS02060 (C6P13_02060) - 407065..407343 (+) 279 WP_135387716.1 GNAT family N-acetyltransferase -
  C6P13_RS02065 (C6P13_02065) - 407445..407987 (+) 543 WP_003608649.1 dUTP diphosphatase -
  C6P13_RS02070 (C6P13_02070) radA 408001..409374 (+) 1374 WP_039968258.1 DNA repair protein RadA Machinery gene
  C6P13_RS02075 (C6P13_02075) - 409386..410489 (+) 1104 WP_003608647.1 PIN/TRAM domain-containing protein -
  C6P13_RS02080 (C6P13_02080) gltX 410569..412065 (+) 1497 WP_003608646.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49364.54 Da        Isoelectric Point: 5.3975

>NTDB_id=278153 C6P13_RS02070 WP_039968258.1 408001..409374(+) (radA) [Weissella confusa strain VTT E-133279]
MAKTKTQFVCSNCGYVSQRYMGRCANCGAWGTFVEEVVQPEKADRKSRVNLAGQIARVERLGEVSIEETPRVDTSIDEFN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSSQLANHGGTILYVAGEESASQIKLRAERLGVKGDADFFLYPETDMTQIR
KAIDETKPDYVIIDSIQTMQQPDVSSAVGSVAQIRETTAELLQIAKTNGITIFIVGHVTKDGAIAGPKILEHMVDTVLYF
EGDNQRSFRLLRAVKNRFGSTNELGVFEMNESGLAEVTNPSGLFLEERLDDASGSAVVIAMEGSRPILVEVQALVTPTVF
GNAQRTASGIDRNRISLLMAVLEKRANLLLQNQDAYVRAAGGVKLDEPAIDLAIAIAIASSYRDKGTRPTDAFVGEIGLT
GEIRRVPNVVDRILEAKKLGFKRVFVPKHAVDTMKEISGIQVIGVATLTDALRLALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=278153 C6P13_RS02070 WP_039968258.1 408001..409374(+) (radA) [Weissella confusa strain VTT E-133279]
ATGGCTAAAACGAAAACACAATTTGTATGTTCGAATTGTGGTTATGTATCACAACGCTATATGGGACGATGCGCTAACTG
TGGGGCTTGGGGCACGTTCGTTGAAGAGGTTGTCCAACCTGAAAAGGCAGACCGCAAATCACGTGTTAACTTGGCTGGTC
AAATTGCCCGTGTTGAACGTTTGGGTGAGGTCAGCATCGAAGAAACGCCACGTGTTGATACATCAATCGATGAATTCAAC
CGTGTCTTGGGTGGTGGTGTCGTACCTGGTTCAATGGTGCTAATCGGTGGTGATCCTGGTATTGGAAAGTCAACGTTGCT
CCTACAGGTTTCAAGTCAATTGGCAAACCATGGTGGCACGATTTTGTATGTCGCTGGTGAGGAAAGTGCGTCACAAATCA
AGTTACGAGCTGAACGTTTGGGTGTGAAGGGGGATGCTGATTTCTTCCTATATCCTGAAACGGACATGACGCAAATTCGT
AAGGCTATCGATGAAACGAAGCCAGATTACGTCATCATTGACTCAATTCAAACGATGCAACAACCCGACGTGTCATCAGC
GGTTGGATCGGTTGCCCAAATTCGTGAAACGACAGCTGAGTTGCTACAAATCGCCAAGACAAATGGCATTACCATCTTCA
TCGTCGGTCACGTGACCAAGGATGGGGCCATCGCTGGTCCGAAGATTTTGGAGCACATGGTTGATACGGTGTTGTACTTC
GAAGGTGATAACCAACGTAGCTTCCGTTTGTTGCGTGCGGTTAAAAACCGTTTTGGTTCAACGAATGAGTTGGGTGTCTT
TGAAATGAACGAAAGTGGCTTGGCTGAAGTAACGAATCCATCGGGTCTTTTCTTAGAAGAGCGCCTAGATGATGCCAGTG
GTTCAGCAGTTGTGATTGCGATGGAAGGGTCACGCCCAATCTTGGTTGAAGTCCAAGCTTTGGTAACGCCAACGGTCTTT
GGTAATGCACAACGCACCGCTTCAGGTATTGACCGTAATCGAATTTCATTGTTGATGGCAGTTTTGGAAAAGCGTGCGAA
CTTGTTGCTACAAAATCAAGATGCGTACGTTCGAGCTGCCGGAGGCGTAAAATTAGATGAGCCAGCCATTGACTTGGCGA
TTGCCATCGCGATTGCATCAAGCTACCGTGACAAGGGGACTCGTCCAACGGATGCCTTTGTTGGTGAAATTGGTTTGACT
GGTGAGATTCGTCGTGTGCCCAATGTCGTTGACCGTATTTTGGAAGCTAAGAAATTAGGTTTCAAGCGCGTATTTGTACC
AAAGCATGCAGTTGATACGATGAAAGAAATTTCTGGTATTCAAGTTATCGGTGTCGCAACGTTGACGGATGCGCTACGTT
TGGCACTGGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A329G1S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

63.797

99.125

0.632
  radA Streptococcus mitis NCTC 12261

63.797

99.125

0.632
  radA Streptococcus pneumoniae Rx1

63.797

99.125

0.632
  radA Streptococcus pneumoniae D39

63.797

99.125

0.632
  radA Streptococcus pneumoniae R6

63.797

99.125

0.632
  radA Streptococcus pneumoniae TIGR4

63.797

99.125

0.632
  radA Bacillus subtilis subsp. subtilis str. 168

59.956

100

0.6

Multiple sequence alignment