Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C6Y56_RS26930 Genome accession   NZ_CP027561
Coordinates   5902428..5902832 (-) Length   134 a.a.
NCBI ID   WP_065258976.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain G7     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5897428..5907832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS26915 (C6Y56_27190) - 5899378..5901438 (-) 2061 WP_169432291.1 methyl-accepting chemotaxis protein -
  C6Y56_RS26920 (C6Y56_27195) - 5901452..5901991 (-) 540 WP_085731577.1 chemotaxis protein CheW -
  C6Y56_RS26925 (C6Y56_27200) pilH 5902002..5902367 (-) 366 WP_011336365.1 twitching motility response regulator PilH -
  C6Y56_RS26930 (C6Y56_27205) pilG 5902428..5902832 (-) 405 WP_065258976.1 twitching motility response regulator PilG Regulator
  C6Y56_RS26935 (C6Y56_27210) gshB 5903057..5904007 (+) 951 WP_169432292.1 glutathione synthase -
  C6Y56_RS26940 (C6Y56_27215) - 5904115..5905014 (+) 900 WP_169432293.1 energy transducer TonB -
  C6Y56_RS26945 (C6Y56_27220) - 5905074..5905646 (+) 573 WP_169432294.1 YqgE/AlgH family protein -
  C6Y56_RS26950 (C6Y56_27225) ruvX 5905646..5906083 (+) 438 WP_007953334.1 Holliday junction resolvase RuvX -
  C6Y56_RS26955 (C6Y56_27230) pyrR 5906165..5906668 (+) 504 WP_169432295.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  C6Y56_RS26960 (C6Y56_27235) - 5906696..5907700 (+) 1005 WP_108591854.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14547.87 Da        Isoelectric Point: 6.2220

>NTDB_id=278142 C6Y56_RS26930 WP_065258976.1 5902428..5902832(-) (pilG) [Pseudomonas fluorescens strain G7]
MEQQSSALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADHHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
ATPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLDAIAAHVPGFAADLPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=278142 C6Y56_RS26930 WP_065258976.1 5902428..5902832(-) (pilG) [Pseudomonas fluorescens strain G7]
ATGGAACAGCAGTCCAGCGCCTTGAAGGTCATGGTGATCGATGACTCGAAAACGATTCGTCGCACCGCCGAGACCCTGTT
GAAAAATGCAGGGTGCGAAGTCATCACCGCAATCGACGGTTTCGACGCCCTGGCGAAGATCGCCGACCACCACCCCGGGA
TCATTTTTGTCGACATCATGATGCCGCGTCTGGATGGTTATCAGACCTGCGCTTTAATCAAGAACAACAGTGCTTTCAAG
GCAACGCCGGTGATCATGCTGTCGTCCCGCGACGGGCTGTTCGACAAGGCCAAGGGGCGGATTGTCGGTTCCGATCAATT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTCGACGCGATTGCGGCCCACGTTCCGGGCTTTGCCGCTGATTTGCCGC
AGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.4

93.284

0.694

Multiple sequence alignment