Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C6Y56_RS24730 Genome accession   NZ_CP027561
Coordinates   5431809..5433176 (-) Length   455 a.a.
NCBI ID   WP_039771749.1    Uniprot ID   A0A2N8E079
Organism   Pseudomonas fluorescens strain G7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5426809..5438176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS24705 (C6Y56_24980) - 5427034..5427744 (+) 711 WP_169431997.1 GntR family transcriptional regulator -
  C6Y56_RS24710 (C6Y56_24985) yjiA 5427858..5428838 (-) 981 WP_169431998.1 GTPase -
  C6Y56_RS24715 (C6Y56_24990) - 5429001..5429198 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  C6Y56_RS24720 (C6Y56_24995) - 5429214..5431280 (-) 2067 WP_169431999.1 carbon starvation CstA family protein -
  C6Y56_RS24725 (C6Y56_25000) - 5431440..5431808 (+) 369 WP_169432000.1 PilZ domain-containing protein -
  C6Y56_RS24730 (C6Y56_25005) radA 5431809..5433176 (-) 1368 WP_039771749.1 DNA repair protein RadA Machinery gene
  C6Y56_RS24735 (C6Y56_25010) - 5433222..5433767 (-) 546 WP_169432001.1 ankyrin repeat domain-containing protein -
  C6Y56_RS24740 (C6Y56_25015) - 5433819..5435360 (-) 1542 WP_169432002.1 catalase -
  C6Y56_RS24745 (C6Y56_25020) mscL 5435646..5436059 (+) 414 WP_102354481.1 large-conductance mechanosensitive channel protein MscL -
  C6Y56_RS24750 (C6Y56_25025) - 5436092..5436868 (-) 777 WP_169432003.1 ferredoxin--NADP reductase -
  C6Y56_RS24755 (C6Y56_25030) - 5437163..5437876 (+) 714 WP_169432004.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48729.20 Da        Isoelectric Point: 6.8987

>NTDB_id=278139 C6Y56_RS24730 WP_039771749.1 5431809..5433176(-) (radA) [Pseudomonas fluorescens strain G7]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKTMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=278139 C6Y56_RS24730 WP_039771749.1 5431809..5433176(-) (radA) [Pseudomonas fluorescens strain G7]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAATG
CGGCGCCTGGAACACCCTGACCGAAACCATGGTCGAGAGCGGCGGTGCCGCCGCCCCGAGCGGGCGCACTGGCTGGGCGG
GGCAACAGGCGCAAATCAAGACCCTGGCCGAAGTCAGCATCGAAGAGATCCCGCGTTTTTCCACAGCCTCCGGCGAGCTC
GACCGGGTGCTCGGCGGTGGTCTGGTGGACGGTTCGGTGGTGTTGATCGGCGGTGATCCCGGTATCGGCAAGTCGACGAT
CCTTTTGCAGACCCTGTGCAACCTCGCCAAGACCATGCCGGCGCTGTACGTCACCGGTGAAGAGTCCCAGCAACAAGTCG
CGATGCGCGCACGTCGCCTTGGCTTGCCGCAGGATCAACTGCGGGTCATGACCGAAACCTGTATCGAAACCATCATCGCC
ACTGCCCGCCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACAATCTTCACCGAACAACTGCAATCGGCACC
GGGCGGCGTGTCCCAGGTGCGTGAAAGTGCGGCATTGCTGGTGCGTTACGCCAAGCAAAGCGGCACGGCGATTTTCCTGG
TCGGTCACGTGACCAAGGAAGGCGCATTGGCCGGGCCACGTGTTCTGGAACATATGGTCGATACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGGTTGCGCCTGCTGCGGGCGGTAAAAAACCGTTTCGGCGCGGTCAACGAACTCGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTTACCCGCGCTCAGGAAGAGGTCCCGGGCA
GTGTGGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTTGCC
AACCCGCGCCGGGTGACCCTGGGGCTGGATCAGAATCGTCTGGCGATGTTGCTGGCGGTGCTGCACCGTCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACCGCGTCCGATCTGGCGCTGA
TGGCCGCCGTCATGTCGAGCCTGCGCAACCGTCCGTTGCCTCATGACTTGTTGGTATTTGGTGAGGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTGCCAAGCGGTCAGGAGCGATTGAAGGAAGCCGCCAAGCACGGCTTCAAGCGCGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAAGCGCCTCCAGGCTTGCAGATCATTGCGGTGACGCGTCTGGAGCAGGCGCTGGACTCGTTGT
TCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(81-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8E079

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464

Multiple sequence alignment