Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6991_RS28200 Genome accession   NZ_CP027555
Coordinates   5178998..5179627 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2013C-3513     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 5173998..5184627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6991_RS28175 ycbZ 5174400..5176160 (-) 1761 WP_000156528.1 Lon protease family protein -
  C6991_RS28180 matP 5176346..5176798 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6991_RS28185 ompA 5176873..5177913 (-) 1041 WP_000750416.1 porin OmpA -
  C6991_RS28195 sulA 5178270..5178779 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6991_RS28200 sxy/tfoX 5178998..5179627 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6991_RS28205 yccS 5179590..5181752 (-) 2163 WP_000875023.1 YccS family putative transporter -
  C6991_RS28210 yccF 5181762..5182208 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C6991_RS28215 helD 5182331..5184385 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=278112 C6991_RS28200 WP_000839153.1 5178998..5179627(+) (sxy/tfoX) [Escherichia coli strain 2013C-3513]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=278112 C6991_RS28200 WP_000839153.1 5178998..5179627(+) (sxy/tfoX) [Escherichia coli strain 2013C-3513]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment