Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D8Z75_RS17390 Genome accession   NZ_CP032791
Coordinates   3305071..3306495 (+) Length   474 a.a.
NCBI ID   WP_000132546.1    Uniprot ID   -
Organism   Escherichia coli strain NZRM4165     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3300071..3311495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8Z75_RS17345 - 3300397..3300575 (+) 179 Protein_3335 hypothetical protein -
  D8Z75_RS17355 (D8Z75_17675) - 3300909..3301265 (+) 357 WP_000207904.1 hypothetical protein -
  D8Z75_RS17360 (D8Z75_17680) - 3301262..3301582 (+) 321 WP_151589300.1 DUF551 domain-containing protein -
  D8Z75_RS17375 (D8Z75_17695) - 3303113..3303457 (+) 345 WP_001281188.1 hypothetical protein -
  D8Z75_RS17380 (D8Z75_17700) - 3303539..3303730 (+) 192 WP_000132739.1 AlpA family phage regulatory protein -
  D8Z75_RS17385 (D8Z75_17705) - 3303711..3304889 (-) 1179 WP_001007947.1 site-specific integrase -
  D8Z75_RS17390 (D8Z75_17710) sbcB 3305071..3306495 (+) 1425 WP_000132546.1 exodeoxyribonuclease I Machinery gene
  D8Z75_RS17395 (D8Z75_17715) tsuB 3306538..3306765 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  D8Z75_RS17400 (D8Z75_17720) tsuA 3306779..3307837 (-) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  D8Z75_RS17405 (D8Z75_17725) plaP 3308016..3309374 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  D8Z75_RS17410 (D8Z75_17730) yoeI 3309364..3309426 (-) 63 WP_010723108.1 membrane protein YoeI -
  D8Z75_RS17415 (D8Z75_17735) yeeY 3309641..3310570 (-) 930 WP_000803327.1 LysR substrate-binding domain-containing protein -
  D8Z75_RS17420 (D8Z75_17740) yeeZ 3310616..3311440 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54397.63 Da        Isoelectric Point: 5.2440

>NTDB_id=278070 D8Z75_RS17390 WP_000132546.1 3305071..3306495(+) (sbcB) [Escherichia coli strain NZRM4165]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=278070 D8Z75_RS17390 WP_000132546.1 3305071..3306495(+) (sbcB) [Escherichia coli strain NZRM4165]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAACGAA
GCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGATAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584