Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D8Z75_RS16870 Genome accession   NZ_CP032791
Coordinates   3240082..3240558 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain NZRM4165     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3235082..3245558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8Z75_RS16835 (D8Z75_17160) - 3235247..3236152 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  D8Z75_RS16840 (D8Z75_17165) - 3236149..3237219 (+) 1071 WP_151589292.1 patatin-like phospholipase family protein -
  D8Z75_RS16845 (D8Z75_17170) - 3237355..3238038 (+) 684 WP_000775497.1 hypothetical protein -
  D8Z75_RS16850 (D8Z75_17175) - 3238054..3238464 (+) 411 WP_000846711.1 hypothetical protein -
  D8Z75_RS16860 (D8Z75_17185) - 3238685..3239506 (+) 822 WP_001234544.1 DUF932 domain-containing protein -
  D8Z75_RS16865 (D8Z75_17190) - 3239588..3240067 (+) 480 WP_000860079.1 antirestriction protein -
  D8Z75_RS16870 (D8Z75_17195) radC 3240082..3240558 (+) 477 WP_001186192.1 RadC family protein Machinery gene
  D8Z75_RS16875 (D8Z75_17200) yeeT 3240621..3240842 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  D8Z75_RS16880 (D8Z75_17205) cbeA 3240916..3241284 (+) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  D8Z75_RS16885 (D8Z75_17210) cbtA 3241373..3241746 (+) 374 Protein_3252 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  D8Z75_RS16890 (D8Z75_17215) yeeW 3241743..3241937 (+) 195 WP_000988600.1 DUF5983 family protein -
  D8Z75_RS16895 (D8Z75_17220) - 3241983..3242063 (+) 81 Protein_3254 hypothetical protein -
  D8Z75_RS28445 (D8Z75_17225) - 3242352..3242459 (-) 108 WP_074147515.1 transposase domain-containing protein -
  D8Z75_RS28775 - 3242411..3242734 (+) 324 WP_269447326.1 EutP/PduV family microcompartment system protein -
  D8Z75_RS16910 (D8Z75_17235) tmaR 3242835..3243164 (-) 330 WP_000450409.1 DUF496 family protein -
  D8Z75_RS16915 (D8Z75_17240) yeeA 3243336..3244394 (-) 1059 WP_001202488.1 FUSC family protein -
  D8Z75_RS16920 (D8Z75_17245) sbmC 3244593..3245066 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=278069 D8Z75_RS16870 WP_001186192.1 3240082..3240558(+) (radC) [Escherichia coli strain NZRM4165]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=278069 D8Z75_RS16870 WP_001186192.1 3240082..3240558(+) (radC) [Escherichia coli strain NZRM4165]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392